miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 139948 0.69 0.774044
Target:  5'- gGCGCaCGGggGCGaagACGcgcgaaacgaguuCCACGcCCUCa -3'
miRNA:   3'- -CGCG-GCCuuCGU---UGU-------------GGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 26330 0.69 0.774969
Target:  5'- gGCGCUGGGGcGCGACGCCgugcGCGgcggCC-CGg -3'
miRNA:   3'- -CGCGGCCUU-CGUUGUGG----UGCa---GGaGC- -5'
5312 3' -56 NC_001798.1 + 135278 0.69 0.774969
Target:  5'- cGCGCUGGuGGCG--GCCGCccCCUCGg -3'
miRNA:   3'- -CGCGGCCuUCGUugUGGUGcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 39899 0.69 0.810852
Target:  5'- cGgGCCGGggGaccuuugggAACGCCGCGUCgaUGg -3'
miRNA:   3'- -CgCGGCCuuCg--------UUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 146494 0.69 0.774969
Target:  5'- cGgGCCGGGccGGCAACGCCccGCG-CCggccgCGg -3'
miRNA:   3'- -CgCGGCCU--UCGUUGUGG--UGCaGGa----GC- -5'
5312 3' -56 NC_001798.1 + 51181 0.69 0.793195
Target:  5'- gGC-CCGGGcGGCGGCGCCcccccgccggGCGUCCUUu -3'
miRNA:   3'- -CGcGGCCU-UCGUUGUGG----------UGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 140814 0.69 0.793195
Target:  5'- gGC-CCGGAA-CGACAUCacguACGUCCUCa -3'
miRNA:   3'- -CGcGGCCUUcGUUGUGG----UGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 44401 0.69 0.810852
Target:  5'- uGgGCCGGGAGCAAUggggucccgcgGCCcaggGCGUCUUgGa -3'
miRNA:   3'- -CgCGGCCUUCGUUG-----------UGG----UGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 108867 0.69 0.810852
Target:  5'- gGCGuUCGGguGCGACGCCGCG--CUCGu -3'
miRNA:   3'- -CGC-GGCCuuCGUUGUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 111062 0.69 0.810852
Target:  5'- cGCGCCG--AGguACAUgACGUgCUCGg -3'
miRNA:   3'- -CGCGGCcuUCguUGUGgUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 120497 0.69 0.814309
Target:  5'- gGUGCCGGAGGCGcgcguguuggccgugAaCGCCGgGUCCa-- -3'
miRNA:   3'- -CGCGGCCUUCGU---------------U-GUGGUgCAGGagc -5'
5312 3' -56 NC_001798.1 + 71911 0.69 0.810852
Target:  5'- gGCcCUGGAgGGCAucCACCccaACGUCCUCGc -3'
miRNA:   3'- -CGcGGCCU-UCGUu-GUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 127506 0.69 0.793195
Target:  5'- cGUGCCGGAgGGCAuccgGCGCCAC--CUUCGc -3'
miRNA:   3'- -CGCGGCCU-UCGU----UGUGGUGcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 2499 0.68 0.827874
Target:  5'- aGCGCCGcGggGCGcgGCGgCCGCGgcggcggCgUCGg -3'
miRNA:   3'- -CGCGGC-CuuCGU--UGU-GGUGCa------GgAGC- -5'
5312 3' -56 NC_001798.1 + 77172 0.68 0.826202
Target:  5'- aCGCCGGGAGCGcCGCCGucgcgacggcaaGUCCcgCGg -3'
miRNA:   3'- cGCGGCCUUCGUuGUGGUg-----------CAGGa-GC- -5'
5312 3' -56 NC_001798.1 + 9731 0.68 0.819446
Target:  5'- gGCGCUGGggGaggugcuguucCAcCACCGCGUUC-CGg -3'
miRNA:   3'- -CGCGGCCuuC-----------GUuGUGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 22953 0.68 0.819446
Target:  5'- cGUGCCGacGAGGCGGCcCCGgCGUCCg-- -3'
miRNA:   3'- -CGCGGC--CUUCGUUGuGGU-GCAGGagc -5'
5312 3' -56 NC_001798.1 + 132210 0.68 0.827874
Target:  5'- -aGCUGGAGGC-GCGCCugG-CCggCGg -3'
miRNA:   3'- cgCGGCCUUCGuUGUGGugCaGGa-GC- -5'
5312 3' -56 NC_001798.1 + 146457 0.68 0.819446
Target:  5'- cGCgGCCGcagccGAGCAGCGCCGCGggCUCc -3'
miRNA:   3'- -CG-CGGCc----UUCGUUGUGGUGCagGAGc -5'
5312 3' -56 NC_001798.1 + 62452 0.68 0.825364
Target:  5'- uCGCCGGuGGGCcGCGCgACGgcgcccggucguccUCCUCGg -3'
miRNA:   3'- cGCGGCC-UUCGuUGUGgUGC--------------AGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.