Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5312 | 3' | -56 | NC_001798.1 | + | 43515 | 0.68 | 0.844197 |
Target: 5'- cGCGCaGGuAGGCGGCgGCCGCGUCUc-- -3' miRNA: 3'- -CGCGgCC-UUCGUUG-UGGUGCAGGagc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 152218 | 0.68 | 0.844197 |
Target: 5'- cGUGCCGGggGUcu-GCCGCGgcggCCgcUCGg -3' miRNA: 3'- -CGCGGCCuuCGuugUGGUGCa---GG--AGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 57618 | 0.68 | 0.844197 |
Target: 5'- uGCGuCCGGggGaggcauuggcCAGCACCACGaCCa-- -3' miRNA: 3'- -CGC-GGCCuuC----------GUUGUGGUGCaGGagc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 39678 | 0.68 | 0.844197 |
Target: 5'- gGCcCCGGcGGCGACcucGCCGCccgCCUCGg -3' miRNA: 3'- -CGcGGCCuUCGUUG---UGGUGca-GGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 23573 | 0.68 | 0.844197 |
Target: 5'- gGCcCCGGggGCGGCGCCcCGgCCg-- -3' miRNA: 3'- -CGcGGCCuuCGUUGUGGuGCaGGagc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 15111 | 0.68 | 0.844197 |
Target: 5'- -gGCCGGuGGC-GCugUcguCGUCCUCGg -3' miRNA: 3'- cgCGGCCuUCGuUGugGu--GCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 1479 | 0.68 | 0.85208 |
Target: 5'- cGCGCCGGGcgccauGGCGucGC-CCGCGcCCgaggCGg -3' miRNA: 3'- -CGCGGCCU------UCGU--UGuGGUGCaGGa---GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 52979 | 0.68 | 0.85208 |
Target: 5'- cGCGaCCGGGcugGGCGGCccGCCACGcCCa-- -3' miRNA: 3'- -CGC-GGCCU---UCGUUG--UGGUGCaGGagc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 146457 | 0.68 | 0.819446 |
Target: 5'- cGCgGCCGcagccGAGCAGCGCCGCGggCUCc -3' miRNA: 3'- -CG-CGGCc----UUCGUUGUGGUGCagGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 22953 | 0.68 | 0.819446 |
Target: 5'- cGUGCCGacGAGGCGGCcCCGgCGUCCg-- -3' miRNA: 3'- -CGCGGC--CUUCGUUGuGGU-GCAGGagc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 137918 | 0.68 | 0.859767 |
Target: 5'- cCGCCGG--GCGGC-CCGCG-CCUCc -3' miRNA: 3'- cGCGGCCuuCGUUGuGGUGCaGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 95690 | 0.68 | 0.859767 |
Target: 5'- gGCGgCGGggGCGGC-CgGCGUCgCcCGa -3' miRNA: 3'- -CGCgGCCuuCGUUGuGgUGCAG-GaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 65369 | 0.68 | 0.859767 |
Target: 5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3' miRNA: 3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 43611 | 0.68 | 0.859767 |
Target: 5'- cGUGCCGGAAGaacuguucCACCGCcUCC-CGa -3' miRNA: 3'- -CGCGGCCUUCguu-----GUGGUGcAGGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 41873 | 0.68 | 0.859767 |
Target: 5'- cGCgGCCGGGgaucagcugcAGCAGgACCcaguCGUCCUUa -3' miRNA: 3'- -CG-CGGCCU----------UCGUUgUGGu---GCAGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 40816 | 0.68 | 0.859767 |
Target: 5'- aGCGCCcccuGGggGCcGCugguuCCGCGUUUUUGg -3' miRNA: 3'- -CGCGG----CCuuCGuUGu----GGUGCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 17977 | 0.68 | 0.859767 |
Target: 5'- aCGUCGGggGgGGCugCGCGgCC-CGg -3' miRNA: 3'- cGCGGCCuuCgUUGugGUGCaGGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 16140 | 0.68 | 0.859767 |
Target: 5'- gGCGgaauaccauaCCGGggGCAccgaGCGCCACGggcggCCcgCGg -3' miRNA: 3'- -CGC----------GGCCuuCGU----UGUGGUGCa----GGa-GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 976 | 0.68 | 0.859767 |
Target: 5'- cGCGCgCGGc--CAuCGCCGCGUCUUCu -3' miRNA: 3'- -CGCG-GCCuucGUuGUGGUGCAGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 115474 | 0.68 | 0.85208 |
Target: 5'- cCGUCGGggGCGugaACCACGaCCccgUCGa -3' miRNA: 3'- cGCGGCCuuCGUug-UGGUGCaGG---AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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