miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 40816 0.68 0.859767
Target:  5'- aGCGCCcccuGGggGCcGCugguuCCGCGUUUUUGg -3'
miRNA:   3'- -CGCGG----CCuuCGuUGu----GGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 17977 0.68 0.859767
Target:  5'- aCGUCGGggGgGGCugCGCGgCC-CGg -3'
miRNA:   3'- cGCGGCCuuCgUUGugGUGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 16140 0.68 0.859767
Target:  5'- gGCGgaauaccauaCCGGggGCAccgaGCGCCACGggcggCCcgCGg -3'
miRNA:   3'- -CGC----------GGCCuuCGU----UGUGGUGCa----GGa-GC- -5'
5312 3' -56 NC_001798.1 + 976 0.68 0.859767
Target:  5'- cGCGCgCGGc--CAuCGCCGCGUCUUCu -3'
miRNA:   3'- -CGCG-GCCuucGUuGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 39863 0.68 0.8513
Target:  5'- gGCGUCGaggcuucGggGguGC-CgGCGUCCUCGg -3'
miRNA:   3'- -CGCGGC-------CuuCguUGuGgUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 65369 0.68 0.859767
Target:  5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3'
miRNA:   3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 104460 0.68 0.85208
Target:  5'- uCGCCcGcAGCAGCGUCugGUCCUCc -3'
miRNA:   3'- cGCGGcCuUCGUUGUGGugCAGGAGc -5'
5312 3' -56 NC_001798.1 + 133754 0.68 0.85208
Target:  5'- cGCGCCcgcguGGggGCGcugcuugcGCACgCACG-CCUCc -3'
miRNA:   3'- -CGCGG-----CCuuCGU--------UGUG-GUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 1479 0.68 0.85208
Target:  5'- cGCGCCGGGcgccauGGCGucGC-CCGCGcCCgaggCGg -3'
miRNA:   3'- -CGCGGCCU------UCGU--UGuGGUGCaGGa---GC- -5'
5312 3' -56 NC_001798.1 + 52979 0.68 0.85208
Target:  5'- cGCGaCCGGGcugGGCGGCccGCCACGcCCa-- -3'
miRNA:   3'- -CGC-GGCCU---UCGUUG--UGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 115474 0.68 0.85208
Target:  5'- cCGUCGGggGCGugaACCACGaCCccgUCGa -3'
miRNA:   3'- cGCGGCCuuCGUug-UGGUGCaGG---AGC- -5'
5312 3' -56 NC_001798.1 + 48128 0.67 0.874531
Target:  5'- -gGCCGGGuuCAACAagCGCGUCUUCu -3'
miRNA:   3'- cgCGGCCUucGUUGUg-GUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 124367 0.67 0.874531
Target:  5'- aGCGCCGG--GUGGCGCCucuGCGUUCUg- -3'
miRNA:   3'- -CGCGGCCuuCGUUGUGG---UGCAGGAgc -5'
5312 3' -56 NC_001798.1 + 67390 0.67 0.880899
Target:  5'- aGCGCCcucGAGGuCAcgcaaaugaccgcGCGCCACGUCUccgUCGa -3'
miRNA:   3'- -CGCGGc--CUUC-GU-------------UGUGGUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 19301 0.67 0.881596
Target:  5'- gGCGaCCGGGAacGCAGCugucuucgcugGCUACGgucCCUCGu -3'
miRNA:   3'- -CGC-GGCCUU--CGUUG-----------UGGUGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 3259 0.67 0.881596
Target:  5'- gGCGCCGu-AGCcggcgGGCACCGCG-CgCUCGu -3'
miRNA:   3'- -CGCGGCcuUCG-----UUGUGGUGCaG-GAGC- -5'
5312 3' -56 NC_001798.1 + 3785 0.67 0.881596
Target:  5'- gGCGCCGGG----GCGCC-CGaggCCUCGa -3'
miRNA:   3'- -CGCGGCCUucguUGUGGuGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 31688 0.67 0.881596
Target:  5'- cGUGCCGGuGGacgcGCACCGCGcgCCcCGg -3'
miRNA:   3'- -CGCGGCCuUCgu--UGUGGUGCa-GGaGC- -5'
5312 3' -56 NC_001798.1 + 139066 0.67 0.874531
Target:  5'- -gGCCGcGGgccaccacguGGCGGCGCCA-GUCCUCc -3'
miRNA:   3'- cgCGGC-CU----------UCGUUGUGGUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 149999 0.67 0.881596
Target:  5'- aCGCCGGGgcgAGCGGCccgugGCCGCGgucgCC-CGa -3'
miRNA:   3'- cGCGGCCU---UCGUUG-----UGGUGCa---GGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.