Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5312 | 3' | -56 | NC_001798.1 | + | 52738 | 0.71 | 0.70473 |
Target: 5'- cGCGCCGcc-GCGgaACAcguggaccuucgccCCGCGUCCUCGg -3' miRNA: 3'- -CGCGGCcuuCGU--UGU--------------GGUGCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 102212 | 0.71 | 0.707703 |
Target: 5'- cGCGCCGGGAGuCGACcgGgCGCGg-CUCGg -3' miRNA: 3'- -CGCGGCCUUC-GUUG--UgGUGCagGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 25279 | 0.7 | 0.717573 |
Target: 5'- cCGCCGGGgcccAGCcacACGCCGgCGcCCUCGg -3' miRNA: 3'- cGCGGCCU----UCGu--UGUGGU-GCaGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 1430 | 0.7 | 0.717573 |
Target: 5'- aGCGCgCGcAGGCGcggugcgaguGCGCCuCGUCCUCGc -3' miRNA: 3'- -CGCG-GCcUUCGU----------UGUGGuGCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 52365 | 0.7 | 0.72737 |
Target: 5'- gGCGCUGG--GCGACACCGCGgcgcgccgCCUg- -3' miRNA: 3'- -CGCGGCCuuCGUUGUGGUGCa-------GGAgc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 56868 | 0.7 | 0.737087 |
Target: 5'- uGgGCCGGAucgAACACCcgcgacCGUCCUCGa -3' miRNA: 3'- -CgCGGCCUucgUUGUGGu-----GCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 28064 | 0.7 | 0.737087 |
Target: 5'- cGCgGUCGaGAGCGcGCcgGCCGCGUCCUCGc -3' miRNA: 3'- -CG-CGGCcUUCGU-UG--UGGUGCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 111621 | 0.7 | 0.745755 |
Target: 5'- aGCcCCGGggGCGGCAgacUCGCGUCgggggcgCUCGg -3' miRNA: 3'- -CGcGGCCuuCGUUGU---GGUGCAG-------GAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 99987 | 0.7 | 0.746714 |
Target: 5'- cGCGuCCGuGGAGCGcaucaAgACCACcUCCUCGa -3' miRNA: 3'- -CGC-GGC-CUUCGU-----UgUGGUGcAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 40166 | 0.7 | 0.746714 |
Target: 5'- cGUGUCGGAAGagaGugGCCGgGUCCgaaUCGa -3' miRNA: 3'- -CGCGGCCUUCg--UugUGGUgCAGG---AGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 26189 | 0.7 | 0.746714 |
Target: 5'- gGCGCUGGAcGGCcGgGCCGCcG-CCUCGg -3' miRNA: 3'- -CGCGGCCU-UCGuUgUGGUG-CaGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 58149 | 0.7 | 0.746714 |
Target: 5'- gGCGCCGG-AGCccaAGCACCuGCGUCagCGa -3' miRNA: 3'- -CGCGGCCuUCG---UUGUGG-UGCAGgaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 20770 | 0.7 | 0.755295 |
Target: 5'- cCGCgGGGAGCGACggcgcccGCCGCGUaggucucccgCCUCa -3' miRNA: 3'- cGCGgCCUUCGUUG-------UGGUGCA----------GGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 31147 | 0.7 | 0.755295 |
Target: 5'- gGCGCgggggcggcggugCGGggGCGAC-CCGCGgaaCCUCc -3' miRNA: 3'- -CGCG-------------GCCuuCGUUGuGGUGCa--GGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 149784 | 0.7 | 0.756243 |
Target: 5'- aGCGCCGGAcGCgGACGCgACGcUCC-Ca -3' miRNA: 3'- -CGCGGCCUuCG-UUGUGgUGC-AGGaGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 98622 | 0.7 | 0.756243 |
Target: 5'- cGCGCCucgGGcGGCGugGCCGCGaCCgUCGc -3' miRNA: 3'- -CGCGG---CCuUCGUugUGGUGCaGG-AGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 6675 | 0.7 | 0.760025 |
Target: 5'- -gGCCGGgcGCcgccuucguggacggGACACCAUGUCUUgGg -3' miRNA: 3'- cgCGGCCuuCG---------------UUGUGGUGCAGGAgC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 122304 | 0.7 | 0.765664 |
Target: 5'- uGCGCCaucacuacgGGAccaAGCAGCGCUuCGUCgUCGu -3' miRNA: 3'- -CGCGG---------CCU---UCGUUGUGGuGCAGgAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 139302 | 0.7 | 0.765664 |
Target: 5'- aGCGCCGcGucGCcGCcCCGCGUCCgcaUCGc -3' miRNA: 3'- -CGCGGC-CuuCGuUGuGGUGCAGG---AGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 139948 | 0.69 | 0.774044 |
Target: 5'- gGCGCaCGGggGCGaagACGcgcgaaacgaguuCCACGcCCUCa -3' miRNA: 3'- -CGCG-GCCuuCGU---UGU-------------GGUGCaGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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