miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 104460 0.68 0.85208
Target:  5'- uCGCCcGcAGCAGCGUCugGUCCUCc -3'
miRNA:   3'- cGCGGcCuUCGUUGUGGugCAGGAGc -5'
5312 3' -56 NC_001798.1 + 133754 0.68 0.85208
Target:  5'- cGCGCCcgcguGGggGCGcugcuugcGCACgCACG-CCUCc -3'
miRNA:   3'- -CGCGG-----CCuuCGU--------UGUG-GUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 43611 0.68 0.859767
Target:  5'- cGUGCCGGAAGaacuguucCACCGCcUCC-CGa -3'
miRNA:   3'- -CGCGGCCUUCguu-----GUGGUGcAGGaGC- -5'
5312 3' -56 NC_001798.1 + 40816 0.68 0.859767
Target:  5'- aGCGCCcccuGGggGCcGCugguuCCGCGUUUUUGg -3'
miRNA:   3'- -CGCGG----CCuuCGuUGu----GGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 137918 0.68 0.859767
Target:  5'- cCGCCGG--GCGGC-CCGCG-CCUCc -3'
miRNA:   3'- cGCGGCCuuCGUUGuGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 95690 0.68 0.859767
Target:  5'- gGCGgCGGggGCGGC-CgGCGUCgCcCGa -3'
miRNA:   3'- -CGCgGCCuuCGUUGuGgUGCAG-GaGC- -5'
5312 3' -56 NC_001798.1 + 65369 0.68 0.859767
Target:  5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3'
miRNA:   3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 976 0.68 0.859767
Target:  5'- cGCGCgCGGc--CAuCGCCGCGUCUUCu -3'
miRNA:   3'- -CGCG-GCCuucGUuGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 41873 0.68 0.859767
Target:  5'- cGCgGCCGGGgaucagcugcAGCAGgACCcaguCGUCCUUa -3'
miRNA:   3'- -CG-CGGCCU----------UCGUUgUGGu---GCAGGAGc -5'
5312 3' -56 NC_001798.1 + 17977 0.68 0.859767
Target:  5'- aCGUCGGggGgGGCugCGCGgCC-CGg -3'
miRNA:   3'- cGCGGCCuuCgUUGugGUGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 16140 0.68 0.859767
Target:  5'- gGCGgaauaccauaCCGGggGCAccgaGCGCCACGggcggCCcgCGg -3'
miRNA:   3'- -CGC----------GGCCuuCGU----UGUGGUGCa----GGa-GC- -5'
5312 3' -56 NC_001798.1 + 121730 0.67 0.865771
Target:  5'- gGCgGCCcaccugucccuggGGAuggggaaAGCGGCACCcccacuccccagGCGUCCUCGg -3'
miRNA:   3'- -CG-CGG-------------CCU-------UCGUUGUGG------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 109999 0.67 0.867252
Target:  5'- cGCGCUGGgcGCAcuACAacgcccugauCCGCGcCUUCGu -3'
miRNA:   3'- -CGCGGCCuuCGU--UGU----------GGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 61208 0.67 0.867252
Target:  5'- cGCGCCGGcGGUuGCACCAa-UCCg-- -3'
miRNA:   3'- -CGCGGCCuUCGuUGUGGUgcAGGagc -5'
5312 3' -56 NC_001798.1 + 46580 0.67 0.867252
Target:  5'- gGCcCCGGggGCAA-ACCcgcGCGUCCcguUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUgUGG---UGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 37300 0.67 0.867252
Target:  5'- gGCGUgGGAGGCGACcucCCGuCGggCCUCc -3'
miRNA:   3'- -CGCGgCCUUCGUUGu--GGU-GCa-GGAGc -5'
5312 3' -56 NC_001798.1 + 26035 0.67 0.867252
Target:  5'- cGCGCgUGGAGGCcGCGCaCGCGcgCCUg- -3'
miRNA:   3'- -CGCG-GCCUUCGuUGUG-GUGCa-GGAgc -5'
5312 3' -56 NC_001798.1 + 125246 0.67 0.867252
Target:  5'- gGCGuuGcGuuGgGGCACgGCGUCCUCc -3'
miRNA:   3'- -CGCggC-CuuCgUUGUGgUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 86332 0.67 0.867252
Target:  5'- -gGCUGGccauGCGACGCCugaggGCGUCCgUCGu -3'
miRNA:   3'- cgCGGCCuu--CGUUGUGG-----UGCAGG-AGC- -5'
5312 3' -56 NC_001798.1 + 79005 0.67 0.867252
Target:  5'- cGCGCCaugcacGAGCAGCugCGCGcCCUg- -3'
miRNA:   3'- -CGCGGcc----UUCGUUGugGUGCaGGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.