miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 27279 0.67 0.874531
Target:  5'- gGCGCgCGGggGgGAggggcUGCCGCGagCUCGg -3'
miRNA:   3'- -CGCG-GCCuuCgUU-----GUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 34961 0.67 0.874531
Target:  5'- gGCGCCGGAgggGGCGGCcGCCgagguGCGggggccCCUCc -3'
miRNA:   3'- -CGCGGCCU---UCGUUG-UGG-----UGCa-----GGAGc -5'
5312 3' -56 NC_001798.1 + 48128 0.67 0.874531
Target:  5'- -gGCCGGGuuCAACAagCGCGUCUUCu -3'
miRNA:   3'- cgCGGCCUucGUUGUg-GUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 124367 0.67 0.874531
Target:  5'- aGCGCCGG--GUGGCGCCucuGCGUUCUg- -3'
miRNA:   3'- -CGCGGCCuuCGUUGUGG---UGCAGGAgc -5'
5312 3' -56 NC_001798.1 + 139066 0.67 0.874531
Target:  5'- -gGCCGcGGgccaccacguGGCGGCGCCA-GUCCUCc -3'
miRNA:   3'- cgCGGC-CU----------UCGUUGUGGUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 14185 0.67 0.867252
Target:  5'- cCGCgUGGggGCAGCACCuCGccaaCUCGc -3'
miRNA:   3'- cGCG-GCCuuCGUUGUGGuGCag--GAGC- -5'
5312 3' -56 NC_001798.1 + 79005 0.67 0.867252
Target:  5'- cGCGCCaugcacGAGCAGCugCGCGcCCUg- -3'
miRNA:   3'- -CGCGGcc----UUCGUUGugGUGCaGGAgc -5'
5312 3' -56 NC_001798.1 + 86332 0.67 0.867252
Target:  5'- -gGCUGGccauGCGACGCCugaggGCGUCCgUCGu -3'
miRNA:   3'- cgCGGCCuu--CGUUGUGG-----UGCAGG-AGC- -5'
5312 3' -56 NC_001798.1 + 125246 0.67 0.867252
Target:  5'- gGCGuuGcGuuGgGGCACgGCGUCCUCc -3'
miRNA:   3'- -CGCggC-CuuCgUUGUGgUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 26035 0.67 0.867252
Target:  5'- cGCGCgUGGAGGCcGCGCaCGCGcgCCUg- -3'
miRNA:   3'- -CGCG-GCCUUCGuUGUG-GUGCa-GGAgc -5'
5312 3' -56 NC_001798.1 + 37300 0.67 0.867252
Target:  5'- gGCGUgGGAGGCGACcucCCGuCGggCCUCc -3'
miRNA:   3'- -CGCGgCCUUCGUUGu--GGU-GCa-GGAGc -5'
5312 3' -56 NC_001798.1 + 46580 0.67 0.867252
Target:  5'- gGCcCCGGggGCAA-ACCcgcGCGUCCcguUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUgUGG---UGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 61208 0.67 0.867252
Target:  5'- cGCGCCGGcGGUuGCACCAa-UCCg-- -3'
miRNA:   3'- -CGCGGCCuUCGuUGUGGUgcAGGagc -5'
5312 3' -56 NC_001798.1 + 109999 0.67 0.867252
Target:  5'- cGCGCUGGgcGCAcuACAacgcccugauCCGCGcCUUCGu -3'
miRNA:   3'- -CGCGGCCuuCGU--UGU----------GGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 102368 0.67 0.867252
Target:  5'- cCGCCGGAAGCc-CACC-CG-CCUgGc -3'
miRNA:   3'- cGCGGCCUUCGuuGUGGuGCaGGAgC- -5'
5312 3' -56 NC_001798.1 + 121730 0.67 0.865771
Target:  5'- gGCgGCCcaccugucccuggGGAuggggaaAGCGGCACCcccacuccccagGCGUCCUCGg -3'
miRNA:   3'- -CG-CGG-------------CCU-------UCGUUGUGG------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 95690 0.68 0.859767
Target:  5'- gGCGgCGGggGCGGC-CgGCGUCgCcCGa -3'
miRNA:   3'- -CGCgGCCuuCGUUGuGgUGCAG-GaGC- -5'
5312 3' -56 NC_001798.1 + 65369 0.68 0.859767
Target:  5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3'
miRNA:   3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 43611 0.68 0.859767
Target:  5'- cGUGCCGGAAGaacuguucCACCGCcUCC-CGa -3'
miRNA:   3'- -CGCGGCCUUCguu-----GUGGUGcAGGaGC- -5'
5312 3' -56 NC_001798.1 + 41873 0.68 0.859767
Target:  5'- cGCgGCCGGGgaucagcugcAGCAGgACCcaguCGUCCUUa -3'
miRNA:   3'- -CG-CGGCCU----------UCGUUgUGGu---GCAGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.