Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5312 | 3' | -56 | NC_001798.1 | + | 26035 | 0.67 | 0.867252 |
Target: 5'- cGCGCgUGGAGGCcGCGCaCGCGcgCCUg- -3' miRNA: 3'- -CGCG-GCCUUCGuUGUG-GUGCa-GGAgc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 26189 | 0.7 | 0.746714 |
Target: 5'- gGCGCUGGAcGGCcGgGCCGCcG-CCUCGg -3' miRNA: 3'- -CGCGGCCU-UCGuUgUGGUG-CaGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 26243 | 0.73 | 0.560777 |
Target: 5'- cGCGCCGGAcuucugcgaggacgaGGCGcacucGCACCGCG-CCUgCGc -3' miRNA: 3'- -CGCGGCCU---------------UCGU-----UGUGGUGCaGGA-GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 26330 | 0.69 | 0.774969 |
Target: 5'- gGCGCUGGGGcGCGACGCCgugcGCGgcggCC-CGg -3' miRNA: 3'- -CGCGGCCUU-CGUUGUGG----UGCa---GGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 27279 | 0.67 | 0.874531 |
Target: 5'- gGCGCgCGGggGgGAggggcUGCCGCGagCUCGg -3' miRNA: 3'- -CGCG-GCCuuCgUU-----GUGGUGCagGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 28064 | 0.7 | 0.737087 |
Target: 5'- cGCgGUCGaGAGCGcGCcgGCCGCGUCCUCGc -3' miRNA: 3'- -CG-CGGCcUUCGU-UG--UGGUGCAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 28208 | 0.79 | 0.279577 |
Target: 5'- gGCGCCGGAGGCcccgcACGCCGCG-CCUg- -3' miRNA: 3'- -CGCGGCCUUCGu----UGUGGUGCaGGAgc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 28351 | 0.79 | 0.279577 |
Target: 5'- uGCGCCGGcGGCGGCcccCCGCGUCCcCGc -3' miRNA: 3'- -CGCGGCCuUCGUUGu--GGUGCAGGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 28393 | 0.68 | 0.827874 |
Target: 5'- cGCGCgGGAAGguACGCCucc-CCUCc -3' miRNA: 3'- -CGCGgCCUUCguUGUGGugcaGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 28788 | 0.73 | 0.5568 |
Target: 5'- gGCGgCGGcGGCGGCGCgCGgGUCCUCc -3' miRNA: 3'- -CGCgGCCuUCGUUGUG-GUgCAGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 31147 | 0.7 | 0.755295 |
Target: 5'- gGCGCgggggcggcggugCGGggGCGAC-CCGCGgaaCCUCc -3' miRNA: 3'- -CGCG-------------GCCuuCGUUGuGGUGCa--GGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 31688 | 0.67 | 0.881596 |
Target: 5'- cGUGCCGGuGGacgcGCACCGCGcgCCcCGg -3' miRNA: 3'- -CGCGGCCuUCgu--UGUGGUGCa-GGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 32243 | 0.66 | 0.92478 |
Target: 5'- gGgGCUgguGGGAGCGucGCGuCCGCGUCCggCGc -3' miRNA: 3'- -CgCGG---CCUUCGU--UGU-GGUGCAGGa-GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 32794 | 0.71 | 0.657592 |
Target: 5'- cGCGCCGGccGGCGACGCCcccGCGggCCaCGg -3' miRNA: 3'- -CGCGGCCu-UCGUUGUGG---UGCa-GGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 34961 | 0.67 | 0.874531 |
Target: 5'- gGCGCCGGAgggGGCGGCcGCCgagguGCGggggccCCUCc -3' miRNA: 3'- -CGCGGCCU---UCGUUG-UGG-----UGCa-----GGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 36478 | 0.66 | 0.919302 |
Target: 5'- aGCGCCgGGAGGgGGCGCCggcgcgacgcggGCGgCCgggCGg -3' miRNA: 3'- -CGCGG-CCUUCgUUGUGG------------UGCaGGa--GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 37300 | 0.67 | 0.867252 |
Target: 5'- gGCGUgGGAGGCGACcucCCGuCGggCCUCc -3' miRNA: 3'- -CGCGgCCUUCGUUGu--GGU-GCa-GGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 39458 | 0.66 | 0.913592 |
Target: 5'- aGCGCCaucagcGGAGGgGGgGCCuggcGCGUgCCUCGu -3' miRNA: 3'- -CGCGG------CCUUCgUUgUGG----UGCA-GGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 39678 | 0.68 | 0.844197 |
Target: 5'- gGCcCCGGcGGCGACcucGCCGCccgCCUCGg -3' miRNA: 3'- -CGcGGCCuUCGUUG---UGGUGca-GGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 39863 | 0.68 | 0.8513 |
Target: 5'- gGCGUCGaggcuucGggGguGC-CgGCGUCCUCGg -3' miRNA: 3'- -CGCGGC-------CuuCguUGuGgUGCAGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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