miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 39899 0.69 0.810852
Target:  5'- cGgGCCGGggGaccuuugggAACGCCGCGUCgaUGg -3'
miRNA:   3'- -CgCGGCCuuCg--------UUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 40166 0.7 0.746714
Target:  5'- cGUGUCGGAAGagaGugGCCGgGUCCgaaUCGa -3'
miRNA:   3'- -CGCGGCCUUCg--UugUGGUgCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 40816 0.68 0.859767
Target:  5'- aGCGCCcccuGGggGCcGCugguuCCGCGUUUUUGg -3'
miRNA:   3'- -CGCGG----CCuuCGuUGu----GGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 41873 0.68 0.859767
Target:  5'- cGCgGCCGGGgaucagcugcAGCAGgACCcaguCGUCCUUa -3'
miRNA:   3'- -CG-CGGCCU----------UCGUUgUGGu---GCAGGAGc -5'
5312 3' -56 NC_001798.1 + 42214 0.72 0.626204
Target:  5'- aGCGCCGcGGgucGGCGugcgcggcgacgaACGCCggaACGUCCUCGc -3'
miRNA:   3'- -CGCGGC-CU---UCGU-------------UGUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 43078 0.79 0.292831
Target:  5'- cGCGCCGGGcucgGGCGccgcCGCCGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU----UCGUu---GUGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 43515 0.68 0.844197
Target:  5'- cGCGCaGGuAGGCGGCgGCCGCGUCUc-- -3'
miRNA:   3'- -CGCGgCC-UUCGUUG-UGGUGCAGGagc -5'
5312 3' -56 NC_001798.1 + 43611 0.68 0.859767
Target:  5'- cGUGCCGGAAGaacuguucCACCGCcUCC-CGa -3'
miRNA:   3'- -CGCGGCCUUCguu-----GUGGUGcAGGaGC- -5'
5312 3' -56 NC_001798.1 + 44401 0.69 0.810852
Target:  5'- uGgGCCGGGAGCAAUggggucccgcgGCCcaggGCGUCUUgGa -3'
miRNA:   3'- -CgCGGCCUUCGUUG-----------UGG----UGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 45069 0.67 0.881596
Target:  5'- uCGCUGGA--CGACACC-CGgcgCCUCGu -3'
miRNA:   3'- cGCGGCCUucGUUGUGGuGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 45401 0.68 0.827874
Target:  5'- -gGCCGGAGGgAcccGCACCGCGgggCUUGg -3'
miRNA:   3'- cgCGGCCUUCgU---UGUGGUGCag-GAGC- -5'
5312 3' -56 NC_001798.1 + 46580 0.67 0.867252
Target:  5'- gGCcCCGGggGCAA-ACCcgcGCGUCCcguUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUgUGG---UGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 48128 0.67 0.874531
Target:  5'- -gGCCGGGuuCAACAagCGCGUCUUCu -3'
miRNA:   3'- cgCGGCCUucGUUGUg-GUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 50100 0.67 0.888445
Target:  5'- -gGCCGGGcuGGUGGCGCCGCGcaugucguUUCUCu -3'
miRNA:   3'- cgCGGCCU--UCGUUGUGGUGC--------AGGAGc -5'
5312 3' -56 NC_001798.1 + 50947 0.66 0.913592
Target:  5'- aCGCCGGAGGCG-CGCCuccacccgGUCC-Ca -3'
miRNA:   3'- cGCGGCCUUCGUuGUGGug------CAGGaGc -5'
5312 3' -56 NC_001798.1 + 51181 0.69 0.793195
Target:  5'- gGC-CCGGGcGGCGGCGCCcccccgccggGCGUCCUUu -3'
miRNA:   3'- -CGcGGCCU-UCGUUGUGG----------UGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 51703 0.66 0.900844
Target:  5'- gGCGCUGGccugguacgucacGGGCGACGCgA--UCCUCGa -3'
miRNA:   3'- -CGCGGCC-------------UUCGUUGUGgUgcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 52365 0.7 0.72737
Target:  5'- gGCGCUGG--GCGACACCGCGgcgcgccgCCUg- -3'
miRNA:   3'- -CGCGGCCuuCGUUGUGGUGCa-------GGAgc -5'
5312 3' -56 NC_001798.1 + 52499 0.66 0.907648
Target:  5'- cGCGCCGGcgcaGGGaCGACGCgGCGgCCgcgCGc -3'
miRNA:   3'- -CGCGGCC----UUC-GUUGUGgUGCaGGa--GC- -5'
5312 3' -56 NC_001798.1 + 52738 0.71 0.70473
Target:  5'- cGCGCCGcc-GCGgaACAcguggaccuucgccCCGCGUCCUCGg -3'
miRNA:   3'- -CGCGGCcuuCGU--UGU--------------GGUGCAGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.