miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 97435 0.68 0.827874
Target:  5'- aGUGCgacgaGGAGGCGcuGCGCCGCGUgCUgGc -3'
miRNA:   3'- -CGCGg----CCUUCGU--UGUGGUGCAgGAgC- -5'
5312 3' -56 NC_001798.1 + 97607 0.66 0.900844
Target:  5'- gGgGCCGGAgagcuggGGCGACAUCGCGacgcgggCCgccgCGg -3'
miRNA:   3'- -CgCGGCCU-------UCGUUGUGGUGCa------GGa---GC- -5'
5312 3' -56 NC_001798.1 + 98622 0.7 0.756243
Target:  5'- cGCGCCucgGGcGGCGugGCCGCGaCCgUCGc -3'
miRNA:   3'- -CGCGG---CCuUCGUugUGGUGCaGG-AGC- -5'
5312 3' -56 NC_001798.1 + 99245 0.71 0.657592
Target:  5'- -aGCCGGggGUGgcACACCAcCGaCCUCa -3'
miRNA:   3'- cgCGGCCuuCGU--UGUGGU-GCaGGAGc -5'
5312 3' -56 NC_001798.1 + 99987 0.7 0.746714
Target:  5'- cGCGuCCGuGGAGCGcaucaAgACCACcUCCUCGa -3'
miRNA:   3'- -CGC-GGC-CUUCGU-----UgUGGUGcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 102212 0.71 0.707703
Target:  5'- cGCGCCGGGAGuCGACcgGgCGCGg-CUCGg -3'
miRNA:   3'- -CGCGGCCUUC-GUUG--UgGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 102368 0.67 0.867252
Target:  5'- cCGCCGGAAGCc-CACC-CG-CCUgGc -3'
miRNA:   3'- cGCGGCCUUCGuuGUGGuGCaGGAgC- -5'
5312 3' -56 NC_001798.1 + 102510 0.66 0.92478
Target:  5'- gGCGCCGGGGuGUccguAgGCCAcCGUCCccgCGg -3'
miRNA:   3'- -CGCGGCCUU-CGu---UgUGGU-GCAGGa--GC- -5'
5312 3' -56 NC_001798.1 + 102999 0.69 0.810852
Target:  5'- aCGCCGGggGCccagguGCGCCcggccagcGCGagCUCGg -3'
miRNA:   3'- cGCGGCCuuCGu-----UGUGG--------UGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 104460 0.68 0.85208
Target:  5'- uCGCCcGcAGCAGCGUCugGUCCUCc -3'
miRNA:   3'- cGCGGcCuUCGUUGUGGugCAGGAGc -5'
5312 3' -56 NC_001798.1 + 105651 0.71 0.697772
Target:  5'- -gGCCGGcgccCAACACCACGUUCUUu -3'
miRNA:   3'- cgCGGCCuuc-GUUGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 107233 0.66 0.919302
Target:  5'- cGCGCCc--GGCAcgaACCugGUCCUgGg -3'
miRNA:   3'- -CGCGGccuUCGUug-UGGugCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 108867 0.69 0.810852
Target:  5'- gGCGuUCGGguGCGACGCCGCG--CUCGu -3'
miRNA:   3'- -CGC-GGCCuuCGUUGUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 109370 0.66 0.907648
Target:  5'- cCGCCcgGGGAGCAgcggGCugCGCGgccgaCUCGg -3'
miRNA:   3'- cGCGG--CCUUCGU----UGugGUGCag---GAGC- -5'
5312 3' -56 NC_001798.1 + 109445 0.71 0.671718
Target:  5'- uGCgGCUGGAGGCGcGCcucgggcaucuggugGCCGCGaUCCUCGa -3'
miRNA:   3'- -CG-CGGCCUUCGU-UG---------------UGGUGC-AGGAGC- -5'
5312 3' -56 NC_001798.1 + 109999 0.67 0.867252
Target:  5'- cGCGCUGGgcGCAcuACAacgcccugauCCGCGcCUUCGu -3'
miRNA:   3'- -CGCGGCCuuCGU--UGU----------GGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 111001 0.66 0.901474
Target:  5'- gGCGCgCGGuauGCGugGCCGCGgCCa-- -3'
miRNA:   3'- -CGCG-GCCuu-CGUugUGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 111062 0.69 0.810852
Target:  5'- cGCGCCG--AGguACAUgACGUgCUCGg -3'
miRNA:   3'- -CGCGGCcuUCguUGUGgUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 111621 0.7 0.745755
Target:  5'- aGCcCCGGggGCGGCAgacUCGCGUCgggggcgCUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUGU---GGUGCAG-------GAGC- -5'
5312 3' -56 NC_001798.1 + 113360 0.73 0.576759
Target:  5'- gGCGCCGGcauGUAuuauaGCCGcCGUCCUCGc -3'
miRNA:   3'- -CGCGGCCuu-CGUug---UGGU-GCAGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.