miRNA display CGI


Results 21 - 40 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 139302 0.7 0.765664
Target:  5'- aGCGCCGcGucGCcGCcCCGCGUCCgcaUCGc -3'
miRNA:   3'- -CGCGGC-CuuCGuUGuGGUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 139066 0.67 0.874531
Target:  5'- -gGCCGcGGgccaccacguGGCGGCGCCA-GUCCUCc -3'
miRNA:   3'- cgCGGC-CU----------UCGUUGUGGUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 137918 0.68 0.859767
Target:  5'- cCGCCGG--GCGGC-CCGCG-CCUCc -3'
miRNA:   3'- cGCGGCCuuCGUUGuGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 137490 0.66 0.919302
Target:  5'- gGgGCCGG-GGCAGaGCCGCGUgCUg- -3'
miRNA:   3'- -CgCGGCCuUCGUUgUGGUGCAgGAgc -5'
5312 3' -56 NC_001798.1 + 135608 0.68 0.827874
Target:  5'- gGCGCCaGAgGGCGucuACAcCCACGUCgUCa -3'
miRNA:   3'- -CGCGGcCU-UCGU---UGU-GGUGCAGgAGc -5'
5312 3' -56 NC_001798.1 + 135335 0.66 0.901474
Target:  5'- gGUGCCGGAcgcguGCGACGCCugccccGCGcUCCg-- -3'
miRNA:   3'- -CGCGGCCUu----CGUUGUGG------UGC-AGGagc -5'
5312 3' -56 NC_001798.1 + 135278 0.69 0.774969
Target:  5'- cGCGCUGGuGGCG--GCCGCccCCUCGg -3'
miRNA:   3'- -CGCGGCCuUCGUugUGGUGcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 135047 0.66 0.92478
Target:  5'- gGCcUCGGAGGCGGCcgGCCGCcUCCUg- -3'
miRNA:   3'- -CGcGGCCUUCGUUG--UGGUGcAGGAgc -5'
5312 3' -56 NC_001798.1 + 134980 0.67 0.88777
Target:  5'- cGUGCCuGGggGCcuggcccgcggugGGCGCCAggguCGUCCUg- -3'
miRNA:   3'- -CGCGG-CCuuCG-------------UUGUGGU----GCAGGAgc -5'
5312 3' -56 NC_001798.1 + 134361 0.66 0.913592
Target:  5'- gGCGUCGuGggGCccGCcgGCCGC-UCCUCGc -3'
miRNA:   3'- -CGCGGC-CuuCGu-UG--UGGUGcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 133754 0.68 0.85208
Target:  5'- cGCGCCcgcguGGggGCGcugcuugcGCACgCACG-CCUCc -3'
miRNA:   3'- -CGCGG-----CCuuCGU--------UGUG-GUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 132210 0.68 0.827874
Target:  5'- -aGCUGGAGGC-GCGCCugG-CCggCGg -3'
miRNA:   3'- cgCGGCCUUCGuUGUGGugCaGGa-GC- -5'
5312 3' -56 NC_001798.1 + 131340 0.66 0.913592
Target:  5'- cGCGCCccGGgcGCGacgucgGCGCCcgGCGcggCCUCGg -3'
miRNA:   3'- -CGCGG--CCuuCGU------UGUGG--UGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 128245 0.73 0.5868
Target:  5'- uCGCUGGAGGCGGCcggcaugguggACCGCGggCUCGg -3'
miRNA:   3'- cGCGGCCUUCGUUG-----------UGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 127506 0.69 0.793195
Target:  5'- cGUGCCGGAgGGCAuccgGCGCCAC--CUUCGc -3'
miRNA:   3'- -CGCGGCCU-UCGU----UGUGGUGcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 126953 0.68 0.833669
Target:  5'- gGUGCgGGAucAGcCAccuggacaucaaguGCGCCaACGUCCUCGu -3'
miRNA:   3'- -CGCGgCCU--UC-GU--------------UGUGG-UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 125246 0.67 0.867252
Target:  5'- gGCGuuGcGuuGgGGCACgGCGUCCUCc -3'
miRNA:   3'- -CGCggC-CuuCgUUGUGgUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 124367 0.67 0.874531
Target:  5'- aGCGCCGG--GUGGCGCCucuGCGUUCUg- -3'
miRNA:   3'- -CGCGGCCuuCGUUGUGG---UGCAGGAgc -5'
5312 3' -56 NC_001798.1 + 122304 0.7 0.765664
Target:  5'- uGCGCCaucacuacgGGAccaAGCAGCGCUuCGUCgUCGu -3'
miRNA:   3'- -CGCGG---------CCU---UCGUUGUGGuGCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 121730 0.67 0.865771
Target:  5'- gGCgGCCcaccugucccuggGGAuggggaaAGCGGCACCcccacuccccagGCGUCCUCGg -3'
miRNA:   3'- -CG-CGG-------------CCU-------UCGUUGUGG------------UGCAGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.