miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 120497 0.69 0.814309
Target:  5'- gGUGCCGGAGGCGcgcguguuggccgugAaCGCCGgGUCCa-- -3'
miRNA:   3'- -CGCGGCCUUCGU---------------U-GUGGUgCAGGagc -5'
5312 3' -56 NC_001798.1 + 116793 0.72 0.627217
Target:  5'- gGCGCCcgacgcGGgcGcCAACACCGCGUCgaCGg -3'
miRNA:   3'- -CGCGG------CCuuC-GUUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 116506 0.66 0.907648
Target:  5'- gGUGCCGGccuucucgcggGGGCGcugcuGCACCGCGgggguccgCUUCGa -3'
miRNA:   3'- -CGCGGCC-----------UUCGU-----UGUGGUGCa-------GGAGC- -5'
5312 3' -56 NC_001798.1 + 115579 0.66 0.930023
Target:  5'- aCGCCuGGcGGCAGCGCCuCGcCCaCGg -3'
miRNA:   3'- cGCGG-CCuUCGUUGUGGuGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 115474 0.68 0.85208
Target:  5'- cCGUCGGggGCGugaACCACGaCCccgUCGa -3'
miRNA:   3'- cGCGGCCuuCGUug-UGGUGCaGG---AGC- -5'
5312 3' -56 NC_001798.1 + 115013 0.66 0.92478
Target:  5'- gGCGCUGGugauGGGCAAgGCCguGCGgagCCUgGa -3'
miRNA:   3'- -CGCGGCC----UUCGUUgUGG--UGCa--GGAgC- -5'
5312 3' -56 NC_001798.1 + 114229 0.67 0.88777
Target:  5'- cUGCUGGGGuccuacuGCAACACCcUGUCgCUCGu -3'
miRNA:   3'- cGCGGCCUU-------CGUUGUGGuGCAG-GAGC- -5'
5312 3' -56 NC_001798.1 + 113360 0.73 0.576759
Target:  5'- gGCGCCGGcauGUAuuauaGCCGcCGUCCUCGc -3'
miRNA:   3'- -CGCGGCCuu-CGUug---UGGU-GCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 111621 0.7 0.745755
Target:  5'- aGCcCCGGggGCGGCAgacUCGCGUCgggggcgCUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUGU---GGUGCAG-------GAGC- -5'
5312 3' -56 NC_001798.1 + 111062 0.69 0.810852
Target:  5'- cGCGCCG--AGguACAUgACGUgCUCGg -3'
miRNA:   3'- -CGCGGCcuUCguUGUGgUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 111001 0.66 0.901474
Target:  5'- gGCGCgCGGuauGCGugGCCGCGgCCa-- -3'
miRNA:   3'- -CGCG-GCCuu-CGUugUGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 109999 0.67 0.867252
Target:  5'- cGCGCUGGgcGCAcuACAacgcccugauCCGCGcCUUCGu -3'
miRNA:   3'- -CGCGGCCuuCGU--UGU----------GGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 109445 0.71 0.671718
Target:  5'- uGCgGCUGGAGGCGcGCcucgggcaucuggugGCCGCGaUCCUCGa -3'
miRNA:   3'- -CG-CGGCCUUCGU-UG---------------UGGUGC-AGGAGC- -5'
5312 3' -56 NC_001798.1 + 109370 0.66 0.907648
Target:  5'- cCGCCcgGGGAGCAgcggGCugCGCGgccgaCUCGg -3'
miRNA:   3'- cGCGG--CCUUCGU----UGugGUGCag---GAGC- -5'
5312 3' -56 NC_001798.1 + 108867 0.69 0.810852
Target:  5'- gGCGuUCGGguGCGACGCCGCG--CUCGu -3'
miRNA:   3'- -CGC-GGCCuuCGUUGUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 107233 0.66 0.919302
Target:  5'- cGCGCCc--GGCAcgaACCugGUCCUgGg -3'
miRNA:   3'- -CGCGGccuUCGUug-UGGugCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 105651 0.71 0.697772
Target:  5'- -gGCCGGcgccCAACACCACGUUCUUu -3'
miRNA:   3'- cgCGGCCuuc-GUUGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 104460 0.68 0.85208
Target:  5'- uCGCCcGcAGCAGCGUCugGUCCUCc -3'
miRNA:   3'- cGCGGcCuUCGUUGUGGugCAGGAGc -5'
5312 3' -56 NC_001798.1 + 102999 0.69 0.810852
Target:  5'- aCGCCGGggGCccagguGCGCCcggccagcGCGagCUCGg -3'
miRNA:   3'- cGCGGCCuuCGu-----UGUGG--------UGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 102510 0.66 0.92478
Target:  5'- gGCGCCGGGGuGUccguAgGCCAcCGUCCccgCGg -3'
miRNA:   3'- -CGCGGCCUU-CGu---UgUGGU-GCAGGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.