miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 102368 0.67 0.867252
Target:  5'- cCGCCGGAAGCc-CACC-CG-CCUgGc -3'
miRNA:   3'- cGCGGCCUUCGuuGUGGuGCaGGAgC- -5'
5312 3' -56 NC_001798.1 + 102212 0.71 0.707703
Target:  5'- cGCGCCGGGAGuCGACcgGgCGCGg-CUCGg -3'
miRNA:   3'- -CGCGGCCUUC-GUUG--UgGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 99987 0.7 0.746714
Target:  5'- cGCGuCCGuGGAGCGcaucaAgACCACcUCCUCGa -3'
miRNA:   3'- -CGC-GGC-CUUCGU-----UgUGGUGcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 99245 0.71 0.657592
Target:  5'- -aGCCGGggGUGgcACACCAcCGaCCUCa -3'
miRNA:   3'- cgCGGCCuuCGU--UGUGGU-GCaGGAGc -5'
5312 3' -56 NC_001798.1 + 98622 0.7 0.756243
Target:  5'- cGCGCCucgGGcGGCGugGCCGCGaCCgUCGc -3'
miRNA:   3'- -CGCGG---CCuUCGUugUGGUGCaGG-AGC- -5'
5312 3' -56 NC_001798.1 + 97607 0.66 0.900844
Target:  5'- gGgGCCGGAgagcuggGGCGACAUCGCGacgcgggCCgccgCGg -3'
miRNA:   3'- -CgCGGCCU-------UCGUUGUGGUGCa------GGa---GC- -5'
5312 3' -56 NC_001798.1 + 97435 0.68 0.827874
Target:  5'- aGUGCgacgaGGAGGCGcuGCGCCGCGUgCUgGc -3'
miRNA:   3'- -CGCGg----CCUUCGU--UGUGGUGCAgGAgC- -5'
5312 3' -56 NC_001798.1 + 95690 0.68 0.859767
Target:  5'- gGCGgCGGggGCGGC-CgGCGUCgCcCGa -3'
miRNA:   3'- -CGCgGCCuuCGUUGuGgUGCAG-GaGC- -5'
5312 3' -56 NC_001798.1 + 93281 0.76 0.40769
Target:  5'- gGCGCCGucGggGCGuaccuggcgcGCGCCGCGggCCUCGu -3'
miRNA:   3'- -CGCGGC--CuuCGU----------UGUGGUGCa-GGAGC- -5'
5312 3' -56 NC_001798.1 + 93126 0.75 0.460888
Target:  5'- cGgGCgGGuuuGAGCAGCGCCugG-CCUCGg -3'
miRNA:   3'- -CgCGgCC---UUCGUUGUGGugCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 91085 0.74 0.495462
Target:  5'- cGCGCCGGAGGCggccGucguggaccccgguGCGCUgcuccgcggggGCGUCCUCGu -3'
miRNA:   3'- -CGCGGCCUUCG----U--------------UGUGG-----------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 86332 0.67 0.867252
Target:  5'- -gGCUGGccauGCGACGCCugaggGCGUCCgUCGu -3'
miRNA:   3'- cgCGGCCuu--CGUUGUGG-----UGCAGG-AGC- -5'
5312 3' -56 NC_001798.1 + 85493 0.66 0.913008
Target:  5'- aGUGCCuGGgcGCGccccacuGCGCCGCGagcaUCUUCGu -3'
miRNA:   3'- -CGCGG-CCuuCGU-------UGUGGUGC----AGGAGC- -5'
5312 3' -56 NC_001798.1 + 84008 0.68 0.844197
Target:  5'- cCGCCGcguGCGA-ACgGCGUCCUCGg -3'
miRNA:   3'- cGCGGCcuuCGUUgUGgUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 80719 0.67 0.895072
Target:  5'- gGCGCUcc--GCAACACCACGgCCUUc -3'
miRNA:   3'- -CGCGGccuuCGUUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 80368 0.66 0.924242
Target:  5'- gGCGCUcgGGAAGCucaguccggcccaGGC-CCuggcggcggugaGCGUCCUCGg -3'
miRNA:   3'- -CGCGG--CCUUCG-------------UUGuGG------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 79957 0.84 0.148061
Target:  5'- gGCGuCCGGAgcGGCGGCGCCGCGUCCg-- -3'
miRNA:   3'- -CGC-GGCCU--UCGUUGUGGUGCAGGagc -5'
5312 3' -56 NC_001798.1 + 79681 0.66 0.911833
Target:  5'- uGCGuCCcGAGGCGGCcugcgugcgGCCcccgcuuccgacggACGUCCUCGa -3'
miRNA:   3'- -CGC-GGcCUUCGUUG---------UGG--------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 79005 0.67 0.867252
Target:  5'- cGCGCCaugcacGAGCAGCugCGCGcCCUg- -3'
miRNA:   3'- -CGCGGcc----UUCGUUGugGUGCaGGAgc -5'
5312 3' -56 NC_001798.1 + 78863 0.71 0.70473
Target:  5'- cCGCCuGGggGCGcucuuugauacucgGCGCCGCGUCgaCGc -3'
miRNA:   3'- cGCGG-CCuuCGU--------------UGUGGUGCAGgaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.