miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 77172 0.68 0.826202
Target:  5'- aCGCCGGGAGCGcCGCCGucgcgacggcaaGUCCcgCGg -3'
miRNA:   3'- cGCGGCCUUCGUuGUGGUg-----------CAGGa-GC- -5'
5312 3' -56 NC_001798.1 + 76546 0.66 0.919302
Target:  5'- aGCaGCUGGAcAGCGACgcgGCCuuCGUCC-CGg -3'
miRNA:   3'- -CG-CGGCCU-UCGUUG---UGGu-GCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 76002 0.71 0.697772
Target:  5'- gGCGCCGGcGGCAGgGCCcCGUgCC-CGc -3'
miRNA:   3'- -CGCGGCCuUCGUUgUGGuGCA-GGaGC- -5'
5312 3' -56 NC_001798.1 + 75597 0.66 0.907648
Target:  5'- cGUGCUGGAcgaaaauucGCAgaucggGCGCCugGcCCUCGc -3'
miRNA:   3'- -CGCGGCCUu--------CGU------UGUGGugCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 74751 0.71 0.657592
Target:  5'- cGC-CCGcGAAGCccucggccccgGACGCCGCGgCCUCGg -3'
miRNA:   3'- -CGcGGC-CUUCG-----------UUGUGGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 71911 0.69 0.810852
Target:  5'- gGCcCUGGAgGGCAucCACCccaACGUCCUCGc -3'
miRNA:   3'- -CGcGGCCU-UCGUu-GUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 71848 0.67 0.881596
Target:  5'- cCGUCGGgcGCcuaGCCACGcccCCUCGg -3'
miRNA:   3'- cGCGGCCuuCGuugUGGUGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 70548 0.72 0.606972
Target:  5'- cGCGCUGGAGGCcgccgggcugcGCACCACGgcggcCCUgGg -3'
miRNA:   3'- -CGCGGCCUUCGu----------UGUGGUGCa----GGAgC- -5'
5312 3' -56 NC_001798.1 + 70343 0.66 0.901474
Target:  5'- cGUGCUGGcacccgcuccugGAGCAACugUGCG-CCUUGc -3'
miRNA:   3'- -CGCGGCC------------UUCGUUGugGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 69921 0.66 0.930023
Target:  5'- aUGCCGGGAcauaacGCGccguauaacACGCCGCGcCUUCGc -3'
miRNA:   3'- cGCGGCCUU------CGU---------UGUGGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 69512 0.76 0.433816
Target:  5'- cGCGCCGGAgcggGGCGugGCCcGCGagCUCGc -3'
miRNA:   3'- -CGCGGCCU----UCGUugUGG-UGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 68517 0.66 0.92478
Target:  5'- uCGggGGAGGgGGCGUCAUGUCCUCGg -3'
miRNA:   3'- cGCggCCUUCgUUGUGGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 68238 0.68 0.844197
Target:  5'- cCGCCGcgcGCcACACCACGcCCUCc -3'
miRNA:   3'- cGCGGCcuuCGuUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 67390 0.67 0.880899
Target:  5'- aGCGCCcucGAGGuCAcgcaaaugaccgcGCGCCACGUCUccgUCGa -3'
miRNA:   3'- -CGCGGc--CUUC-GU-------------UGUGGUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 65369 0.68 0.859767
Target:  5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3'
miRNA:   3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 64938 0.66 0.92478
Target:  5'- -gGCCGcGAGCAGCAUCA---CCUCGg -3'
miRNA:   3'- cgCGGCcUUCGUUGUGGUgcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 62563 0.66 0.907648
Target:  5'- uCGCCGGAcGuCGcCGCCACGUCaUCc -3'
miRNA:   3'- cGCGGCCUuC-GUuGUGGUGCAGgAGc -5'
5312 3' -56 NC_001798.1 + 62452 0.68 0.825364
Target:  5'- uCGCCGGuGGGCcGCGCgACGgcgcccggucguccUCCUCGg -3'
miRNA:   3'- cGCGGCC-UUCGuUGUGgUGC--------------AGGAGC- -5'
5312 3' -56 NC_001798.1 + 61208 0.67 0.867252
Target:  5'- cGCGCCGGcGGUuGCACCAa-UCCg-- -3'
miRNA:   3'- -CGCGGCCuUCGuUGUGGUgcAGGagc -5'
5312 3' -56 NC_001798.1 + 59834 0.66 0.919302
Target:  5'- gGCGCCGc-GGUcGC-CCGCGUCCggcUCGg -3'
miRNA:   3'- -CGCGGCcuUCGuUGuGGUGCAGG---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.