miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 43515 0.68 0.844197
Target:  5'- cGCGCaGGuAGGCGGCgGCCGCGUCUc-- -3'
miRNA:   3'- -CGCGgCC-UUCGUUG-UGGUGCAGGagc -5'
5312 3' -56 NC_001798.1 + 43078 0.79 0.292831
Target:  5'- cGCGCCGGGcucgGGCGccgcCGCCGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU----UCGUu---GUGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 42214 0.72 0.626204
Target:  5'- aGCGCCGcGGgucGGCGugcgcggcgacgaACGCCggaACGUCCUCGc -3'
miRNA:   3'- -CGCGGC-CU---UCGU-------------UGUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 41873 0.68 0.859767
Target:  5'- cGCgGCCGGGgaucagcugcAGCAGgACCcaguCGUCCUUa -3'
miRNA:   3'- -CG-CGGCCU----------UCGUUgUGGu---GCAGGAGc -5'
5312 3' -56 NC_001798.1 + 40816 0.68 0.859767
Target:  5'- aGCGCCcccuGGggGCcGCugguuCCGCGUUUUUGg -3'
miRNA:   3'- -CGCGG----CCuuCGuUGu----GGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 40166 0.7 0.746714
Target:  5'- cGUGUCGGAAGagaGugGCCGgGUCCgaaUCGa -3'
miRNA:   3'- -CGCGGCCUUCg--UugUGGUgCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 39899 0.69 0.810852
Target:  5'- cGgGCCGGggGaccuuugggAACGCCGCGUCgaUGg -3'
miRNA:   3'- -CgCGGCCuuCg--------UUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 39863 0.68 0.8513
Target:  5'- gGCGUCGaggcuucGggGguGC-CgGCGUCCUCGg -3'
miRNA:   3'- -CGCGGC-------CuuCguUGuGgUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 39678 0.68 0.844197
Target:  5'- gGCcCCGGcGGCGACcucGCCGCccgCCUCGg -3'
miRNA:   3'- -CGcGGCCuUCGUUG---UGGUGca-GGAGC- -5'
5312 3' -56 NC_001798.1 + 39458 0.66 0.913592
Target:  5'- aGCGCCaucagcGGAGGgGGgGCCuggcGCGUgCCUCGu -3'
miRNA:   3'- -CGCGG------CCUUCgUUgUGG----UGCA-GGAGC- -5'
5312 3' -56 NC_001798.1 + 37300 0.67 0.867252
Target:  5'- gGCGUgGGAGGCGACcucCCGuCGggCCUCc -3'
miRNA:   3'- -CGCGgCCUUCGUUGu--GGU-GCa-GGAGc -5'
5312 3' -56 NC_001798.1 + 36478 0.66 0.919302
Target:  5'- aGCGCCgGGAGGgGGCGCCggcgcgacgcggGCGgCCgggCGg -3'
miRNA:   3'- -CGCGG-CCUUCgUUGUGG------------UGCaGGa--GC- -5'
5312 3' -56 NC_001798.1 + 34961 0.67 0.874531
Target:  5'- gGCGCCGGAgggGGCGGCcGCCgagguGCGggggccCCUCc -3'
miRNA:   3'- -CGCGGCCU---UCGUUG-UGG-----UGCa-----GGAGc -5'
5312 3' -56 NC_001798.1 + 32794 0.71 0.657592
Target:  5'- cGCGCCGGccGGCGACGCCcccGCGggCCaCGg -3'
miRNA:   3'- -CGCGGCCu-UCGUUGUGG---UGCa-GGaGC- -5'
5312 3' -56 NC_001798.1 + 32243 0.66 0.92478
Target:  5'- gGgGCUgguGGGAGCGucGCGuCCGCGUCCggCGc -3'
miRNA:   3'- -CgCGG---CCUUCGU--UGU-GGUGCAGGa-GC- -5'
5312 3' -56 NC_001798.1 + 31688 0.67 0.881596
Target:  5'- cGUGCCGGuGGacgcGCACCGCGcgCCcCGg -3'
miRNA:   3'- -CGCGGCCuUCgu--UGUGGUGCa-GGaGC- -5'
5312 3' -56 NC_001798.1 + 31147 0.7 0.755295
Target:  5'- gGCGCgggggcggcggugCGGggGCGAC-CCGCGgaaCCUCc -3'
miRNA:   3'- -CGCG-------------GCCuuCGUUGuGGUGCa--GGAGc -5'
5312 3' -56 NC_001798.1 + 28788 0.73 0.5568
Target:  5'- gGCGgCGGcGGCGGCGCgCGgGUCCUCc -3'
miRNA:   3'- -CGCgGCCuUCGUUGUG-GUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 28393 0.68 0.827874
Target:  5'- cGCGCgGGAAGguACGCCucc-CCUCc -3'
miRNA:   3'- -CGCGgCCUUCguUGUGGugcaGGAGc -5'
5312 3' -56 NC_001798.1 + 28351 0.79 0.279577
Target:  5'- uGCGCCGGcGGCGGCcccCCGCGUCCcCGc -3'
miRNA:   3'- -CGCGGCCuUCGUUGu--GGUGCAGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.