miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 135047 0.66 0.92478
Target:  5'- gGCcUCGGAGGCGGCcgGCCGCcUCCUg- -3'
miRNA:   3'- -CGcGGCCUUCGUUG--UGGUGcAGGAgc -5'
5312 3' -56 NC_001798.1 + 142132 0.66 0.92478
Target:  5'- cGCuGCCGGAcGCGGCACagguggugCACGUgUUUGa -3'
miRNA:   3'- -CG-CGGCCUuCGUUGUG--------GUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 58826 0.66 0.930023
Target:  5'- uCGUCGGccagcaccAGCAGCGCCGCGUaggCGg -3'
miRNA:   3'- cGCGGCCu-------UCGUUGUGGUGCAggaGC- -5'
5312 3' -56 NC_001798.1 + 115579 0.66 0.930023
Target:  5'- aCGCCuGGcGGCAGCGCCuCGcCCaCGg -3'
miRNA:   3'- cGCGG-CCuUCGUUGUGGuGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 24477 0.66 0.930023
Target:  5'- uCGCCGcccuGggGCGccugaGCGCCGCGcccgCCUCc -3'
miRNA:   3'- cGCGGC----CuuCGU-----UGUGGUGCa---GGAGc -5'
5312 3' -56 NC_001798.1 + 4414 0.66 0.919302
Target:  5'- gGCGCCGGGggucgcGGCGACaggcugGCCAUgggGUCCg-- -3'
miRNA:   3'- -CGCGGCCU------UCGUUG------UGGUG---CAGGagc -5'
5312 3' -56 NC_001798.1 + 107233 0.66 0.919302
Target:  5'- cGCGCCc--GGCAcgaACCugGUCCUgGg -3'
miRNA:   3'- -CGCGGccuUCGUug-UGGugCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 79681 0.66 0.911833
Target:  5'- uGCGuCCcGAGGCGGCcugcgugcgGCCcccgcuuccgacggACGUCCUCGa -3'
miRNA:   3'- -CGC-GGcCUUCGUUG---------UGG--------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 85493 0.66 0.913008
Target:  5'- aGUGCCuGGgcGCGccccacuGCGCCGCGagcaUCUUCGu -3'
miRNA:   3'- -CGCGG-CCuuCGU-------UGUGGUGC----AGGAGC- -5'
5312 3' -56 NC_001798.1 + 153753 0.66 0.913008
Target:  5'- aGCGCCagguggggcggaaGGggGCGcuGCGgcCCGCGcUCCUUGc -3'
miRNA:   3'- -CGCGG-------------CCuuCGU--UGU--GGUGC-AGGAGC- -5'
5312 3' -56 NC_001798.1 + 39458 0.66 0.913592
Target:  5'- aGCGCCaucagcGGAGGgGGgGCCuggcGCGUgCCUCGu -3'
miRNA:   3'- -CGCGG------CCUUCgUUgUGG----UGCA-GGAGC- -5'
5312 3' -56 NC_001798.1 + 50947 0.66 0.913592
Target:  5'- aCGCCGGAGGCG-CGCCuccacccgGUCC-Ca -3'
miRNA:   3'- cGCGGCCUUCGUuGUGGug------CAGGaGc -5'
5312 3' -56 NC_001798.1 + 131340 0.66 0.913592
Target:  5'- cGCGCCccGGgcGCGacgucgGCGCCcgGCGcggCCUCGg -3'
miRNA:   3'- -CGCGG--CCuuCGU------UGUGG--UGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 154094 0.66 0.913592
Target:  5'- aGCGCCGGGGcGCGgccgGCGCCGgGgacCC-CGg -3'
miRNA:   3'- -CGCGGCCUU-CGU----UGUGGUgCa--GGaGC- -5'
5312 3' -56 NC_001798.1 + 134361 0.66 0.913592
Target:  5'- gGCGUCGuGggGCccGCcgGCCGC-UCCUCGc -3'
miRNA:   3'- -CGCGGC-CuuCGu-UG--UGGUGcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 150158 0.66 0.913592
Target:  5'- cGCGCCucuuccGGggGCGGgcCGCCGCccCCUCc -3'
miRNA:   3'- -CGCGG------CCuuCGUU--GUGGUGcaGGAGc -5'
5312 3' -56 NC_001798.1 + 36478 0.66 0.919302
Target:  5'- aGCGCCgGGAGGgGGCGCCggcgcgacgcggGCGgCCgggCGg -3'
miRNA:   3'- -CGCGG-CCUUCgUUGUGG------------UGCaGGa--GC- -5'
5312 3' -56 NC_001798.1 + 59834 0.66 0.919302
Target:  5'- gGCGCCGc-GGUcGC-CCGCGUCCggcUCGg -3'
miRNA:   3'- -CGCGGCcuUCGuUGuGGUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 76546 0.66 0.919302
Target:  5'- aGCaGCUGGAcAGCGACgcgGCCuuCGUCC-CGg -3'
miRNA:   3'- -CG-CGGCCU-UCGUUG---UGGu-GCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 137490 0.66 0.919302
Target:  5'- gGgGCCGG-GGCAGaGCCGCGUgCUg- -3'
miRNA:   3'- -CgCGGCCuUCGUUgUGGUGCAgGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.