Results 61 - 80 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5312 | 3' | -56 | NC_001798.1 | + | 36478 | 0.66 | 0.919302 |
Target: 5'- aGCGCCgGGAGGgGGCGCCggcgcgacgcggGCGgCCgggCGg -3' miRNA: 3'- -CGCGG-CCUUCgUUGUGG------------UGCaGGa--GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 150158 | 0.66 | 0.913592 |
Target: 5'- cGCGCCucuuccGGggGCGGgcCGCCGCccCCUCc -3' miRNA: 3'- -CGCGG------CCuuCGUU--GUGGUGcaGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 52499 | 0.66 | 0.907648 |
Target: 5'- cGCGCCGGcgcaGGGaCGACGCgGCGgCCgcgCGc -3' miRNA: 3'- -CGCGGCC----UUC-GUUGUGgUGCaGGa--GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 19985 | 0.66 | 0.907648 |
Target: 5'- cCGCCGGAcGCGGauuCCGgGUUCUCc -3' miRNA: 3'- cGCGGCCUuCGUUgu-GGUgCAGGAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 152093 | 0.66 | 0.907648 |
Target: 5'- cGgGCCGGggGuCGGCcCCgucaaGCGUCCcCGc -3' miRNA: 3'- -CgCGGCCuuC-GUUGuGG-----UGCAGGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 116506 | 0.66 | 0.907648 |
Target: 5'- gGUGCCGGccuucucgcggGGGCGcugcuGCACCGCGgggguccgCUUCGa -3' miRNA: 3'- -CGCGGCC-----------UUCGU-----UGUGGUGCa-------GGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 109370 | 0.66 | 0.907648 |
Target: 5'- cCGCCcgGGGAGCAgcggGCugCGCGgccgaCUCGg -3' miRNA: 3'- cGCGG--CCUUCGU----UGugGUGCag---GAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 1712 | 0.66 | 0.907648 |
Target: 5'- cGCgGCCGGAGGcCAGCACggugcggcgCAgGUCC-CGc -3' miRNA: 3'- -CG-CGGCCUUC-GUUGUG---------GUgCAGGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 15210 | 0.66 | 0.907648 |
Target: 5'- -aGCCGGggGgAGCGuCCGCGggUCCgugUGg -3' miRNA: 3'- cgCGGCCuuCgUUGU-GGUGC--AGGa--GC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 111001 | 0.66 | 0.901474 |
Target: 5'- gGCGCgCGGuauGCGugGCCGCGgCCa-- -3' miRNA: 3'- -CGCG-GCCuu-CGUugUGGUGCaGGagc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 62563 | 0.66 | 0.907648 |
Target: 5'- uCGCCGGAcGuCGcCGCCACGUCaUCc -3' miRNA: 3'- cGCGGCCUuC-GUuGUGGUGCAGgAGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 75597 | 0.66 | 0.907648 |
Target: 5'- cGUGCUGGAcgaaaauucGCAgaucggGCGCCugGcCCUCGc -3' miRNA: 3'- -CGCGGCCUu--------CGU------UGUGGugCaGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 134361 | 0.66 | 0.913592 |
Target: 5'- gGCGUCGuGggGCccGCcgGCCGC-UCCUCGc -3' miRNA: 3'- -CGCGGC-CuuCGu-UG--UGGUGcAGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 154094 | 0.66 | 0.913592 |
Target: 5'- aGCGCCGGGGcGCGgccgGCGCCGgGgacCC-CGg -3' miRNA: 3'- -CGCGGCCUU-CGU----UGUGGUgCa--GGaGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 131340 | 0.66 | 0.913592 |
Target: 5'- cGCGCCccGGgcGCGacgucgGCGCCcgGCGcggCCUCGg -3' miRNA: 3'- -CGCGG--CCuuCGU------UGUGG--UGCa--GGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 50947 | 0.66 | 0.913592 |
Target: 5'- aCGCCGGAGGCG-CGCCuccacccgGUCC-Ca -3' miRNA: 3'- cGCGGCCUUCGUuGUGGug------CAGGaGc -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 39458 | 0.66 | 0.913592 |
Target: 5'- aGCGCCaucagcGGAGGgGGgGCCuggcGCGUgCCUCGu -3' miRNA: 3'- -CGCGG------CCUUCgUUgUGG----UGCA-GGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 153753 | 0.66 | 0.913008 |
Target: 5'- aGCGCCagguggggcggaaGGggGCGcuGCGgcCCGCGcUCCUUGc -3' miRNA: 3'- -CGCGG-------------CCuuCGU--UGU--GGUGC-AGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 85493 | 0.66 | 0.913008 |
Target: 5'- aGUGCCuGGgcGCGccccacuGCGCCGCGagcaUCUUCGu -3' miRNA: 3'- -CGCGG-CCuuCGU-------UGUGGUGC----AGGAGC- -5' |
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5312 | 3' | -56 | NC_001798.1 | + | 79681 | 0.66 | 0.911833 |
Target: 5'- uGCGuCCcGAGGCGGCcugcgugcgGCCcccgcuuccgacggACGUCCUCGa -3' miRNA: 3'- -CGC-GGcCUUCGUUG---------UGG--------------UGCAGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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