miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 97607 0.66 0.900844
Target:  5'- gGgGCCGGAgagcuggGGCGACAUCGCGacgcgggCCgccgCGg -3'
miRNA:   3'- -CgCGGCCU-------UCGUUGUGGUGCa------GGa---GC- -5'
5312 3' -56 NC_001798.1 + 51703 0.66 0.900844
Target:  5'- gGCGCUGGccugguacgucacGGGCGACGCgA--UCCUCGa -3'
miRNA:   3'- -CGCGGCC-------------UUCGUUGUGgUgcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 154046 0.67 0.895072
Target:  5'- cGCGCCGGGGcGCGGCACgGCuGgagcgCCggggCGc -3'
miRNA:   3'- -CGCGGCCUU-CGUUGUGgUG-Ca----GGa---GC- -5'
5312 3' -56 NC_001798.1 + 80719 0.67 0.895072
Target:  5'- gGCGCUcc--GCAACACCACGgCCUUc -3'
miRNA:   3'- -CGCGGccuuCGUUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 16999 0.67 0.895072
Target:  5'- gGCGCUuGGgcGgAGCGCCGCGUCa--- -3'
miRNA:   3'- -CGCGG-CCuuCgUUGUGGUGCAGgagc -5'
5312 3' -56 NC_001798.1 + 1890 0.67 0.895072
Target:  5'- gGCGCCGGccAGCAGCcccaggaacuCCACGgcgCCggCGa -3'
miRNA:   3'- -CGCGGCCu-UCGUUGu---------GGUGCa--GGa-GC- -5'
5312 3' -56 NC_001798.1 + 9167 0.67 0.894419
Target:  5'- cGCGCCGGGgggcagggucucuGGCGGguCCccgcguGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU-------------UCGUUguGG------UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 111001 0.66 0.901474
Target:  5'- gGCGCgCGGuauGCGugGCCGCGgCCa-- -3'
miRNA:   3'- -CGCG-GCCuu-CGUugUGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 15210 0.66 0.907648
Target:  5'- -aGCCGGggGgAGCGuCCGCGggUCCgugUGg -3'
miRNA:   3'- cgCGGCCuuCgUUGU-GGUGC--AGGa--GC- -5'
5312 3' -56 NC_001798.1 + 1712 0.66 0.907648
Target:  5'- cGCgGCCGGAGGcCAGCACggugcggcgCAgGUCC-CGc -3'
miRNA:   3'- -CG-CGGCCUUC-GUUGUG---------GUgCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 153753 0.66 0.913008
Target:  5'- aGCGCCagguggggcggaaGGggGCGcuGCGgcCCGCGcUCCUUGc -3'
miRNA:   3'- -CGCGG-------------CCuuCGU--UGU--GGUGC-AGGAGC- -5'
5312 3' -56 NC_001798.1 + 85493 0.66 0.913008
Target:  5'- aGUGCCuGGgcGCGccccacuGCGCCGCGagcaUCUUCGu -3'
miRNA:   3'- -CGCGG-CCuuCGU-------UGUGGUGC----AGGAGC- -5'
5312 3' -56 NC_001798.1 + 79681 0.66 0.911833
Target:  5'- uGCGuCCcGAGGCGGCcugcgugcgGCCcccgcuuccgacggACGUCCUCGa -3'
miRNA:   3'- -CGC-GGcCUUCGUUG---------UGG--------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 75597 0.66 0.907648
Target:  5'- cGUGCUGGAcgaaaauucGCAgaucggGCGCCugGcCCUCGc -3'
miRNA:   3'- -CGCGGCCUu--------CGU------UGUGGugCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 62563 0.66 0.907648
Target:  5'- uCGCCGGAcGuCGcCGCCACGUCaUCc -3'
miRNA:   3'- cGCGGCCUuC-GUuGUGGUGCAGgAGc -5'
5312 3' -56 NC_001798.1 + 52499 0.66 0.907648
Target:  5'- cGCGCCGGcgcaGGGaCGACGCgGCGgCCgcgCGc -3'
miRNA:   3'- -CGCGGCC----UUC-GUUGUGgUGCaGGa--GC- -5'
5312 3' -56 NC_001798.1 + 19985 0.66 0.907648
Target:  5'- cCGCCGGAcGCGGauuCCGgGUUCUCc -3'
miRNA:   3'- cGCGGCCUuCGUUgu-GGUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 152093 0.66 0.907648
Target:  5'- cGgGCCGGggGuCGGCcCCgucaaGCGUCCcCGc -3'
miRNA:   3'- -CgCGGCCuuC-GUUGuGG-----UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 116506 0.66 0.907648
Target:  5'- gGUGCCGGccuucucgcggGGGCGcugcuGCACCGCGgggguccgCUUCGa -3'
miRNA:   3'- -CGCGGCC-----------UUCGU-----UGUGGUGCa-------GGAGC- -5'
5312 3' -56 NC_001798.1 + 109370 0.66 0.907648
Target:  5'- cCGCCcgGGGAGCAgcggGCugCGCGgccgaCUCGg -3'
miRNA:   3'- cGCGG--CCUUCGU----UGugGUGCag---GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.