miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 61208 0.67 0.867252
Target:  5'- cGCGCCGGcGGUuGCACCAa-UCCg-- -3'
miRNA:   3'- -CGCGGCCuUCGuUGUGGUgcAGGagc -5'
5312 3' -56 NC_001798.1 + 46580 0.67 0.867252
Target:  5'- gGCcCCGGggGCAA-ACCcgcGCGUCCcguUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUgUGG---UGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 149999 0.67 0.881596
Target:  5'- aCGCCGGGgcgAGCGGCccgugGCCGCGgucgCC-CGa -3'
miRNA:   3'- cGCGGCCU---UCGUUG-----UGGUGCa---GGaGC- -5'
5312 3' -56 NC_001798.1 + 71848 0.67 0.881596
Target:  5'- cCGUCGGgcGCcuaGCCACGcccCCUCGg -3'
miRNA:   3'- cGCGGCCuuCGuugUGGUGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 114229 0.67 0.88777
Target:  5'- cUGCUGGGGuccuacuGCAACACCcUGUCgCUCGu -3'
miRNA:   3'- cGCGGCCUU-------CGUUGUGGuGCAG-GAGC- -5'
5312 3' -56 NC_001798.1 + 1712 0.66 0.907648
Target:  5'- cGCgGCCGGAGGcCAGCACggugcggcgCAgGUCC-CGc -3'
miRNA:   3'- -CG-CGGCCUUC-GUUGUG---------GUgCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 15210 0.66 0.907648
Target:  5'- -aGCCGGggGgAGCGuCCGCGggUCCgugUGg -3'
miRNA:   3'- cgCGGCCuuCgUUGU-GGUGC--AGGa--GC- -5'
5312 3' -56 NC_001798.1 + 111001 0.66 0.901474
Target:  5'- gGCGCgCGGuauGCGugGCCGCGgCCa-- -3'
miRNA:   3'- -CGCG-GCCuu-CGUugUGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 4215 0.66 0.901474
Target:  5'- gGCGCuggCGGggGCGcGgGCgGCGUCgUCGu -3'
miRNA:   3'- -CGCG---GCCuuCGU-UgUGgUGCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 135335 0.66 0.901474
Target:  5'- gGUGCCGGAcgcguGCGACGCCugccccGCGcUCCg-- -3'
miRNA:   3'- -CGCGGCCUu----CGUUGUGG------UGC-AGGagc -5'
5312 3' -56 NC_001798.1 + 70343 0.66 0.901474
Target:  5'- cGUGCUGGcacccgcuccugGAGCAACugUGCG-CCUUGc -3'
miRNA:   3'- -CGCGGCC------------UUCGUUGugGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 97607 0.66 0.900844
Target:  5'- gGgGCCGGAgagcuggGGCGACAUCGCGacgcgggCCgccgCGg -3'
miRNA:   3'- -CgCGGCCU-------UCGUUGUGGUGCa------GGa---GC- -5'
5312 3' -56 NC_001798.1 + 51703 0.66 0.900844
Target:  5'- gGCGCUGGccugguacgucacGGGCGACGCgA--UCCUCGa -3'
miRNA:   3'- -CGCGGCC-------------UUCGUUGUGgUgcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 154046 0.67 0.895072
Target:  5'- cGCGCCGGGGcGCGGCACgGCuGgagcgCCggggCGc -3'
miRNA:   3'- -CGCGGCCUU-CGUUGUGgUG-Ca----GGa---GC- -5'
5312 3' -56 NC_001798.1 + 80719 0.67 0.895072
Target:  5'- gGCGCUcc--GCAACACCACGgCCUUc -3'
miRNA:   3'- -CGCGGccuuCGUUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 16999 0.67 0.895072
Target:  5'- gGCGCUuGGgcGgAGCGCCGCGUCa--- -3'
miRNA:   3'- -CGCGG-CCuuCgUUGUGGUGCAGgagc -5'
5312 3' -56 NC_001798.1 + 1890 0.67 0.895072
Target:  5'- gGCGCCGGccAGCAGCcccaggaacuCCACGgcgCCggCGa -3'
miRNA:   3'- -CGCGGCCu-UCGUUGu---------GGUGCa--GGa-GC- -5'
5312 3' -56 NC_001798.1 + 9167 0.67 0.894419
Target:  5'- cGCGCCGGGgggcagggucucuGGCGGguCCccgcguGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU-------------UCGUUguGG------UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 50100 0.67 0.888445
Target:  5'- -gGCCGGGcuGGUGGCGCCGCGcaugucguUUCUCu -3'
miRNA:   3'- cgCGGCCU--UCGUUGUGGUGC--------AGGAGc -5'
5312 3' -56 NC_001798.1 + 134980 0.67 0.88777
Target:  5'- cGUGCCuGGggGCcuggcccgcggugGGCGCCAggguCGUCCUg- -3'
miRNA:   3'- -CGCGG-CCuuCG-------------UUGUGGU----GCAGGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.