miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 39458 0.66 0.913592
Target:  5'- aGCGCCaucagcGGAGGgGGgGCCuggcGCGUgCCUCGu -3'
miRNA:   3'- -CGCGG------CCUUCgUUgUGG----UGCA-GGAGC- -5'
5312 3' -56 NC_001798.1 + 50947 0.66 0.913592
Target:  5'- aCGCCGGAGGCG-CGCCuccacccgGUCC-Ca -3'
miRNA:   3'- cGCGGCCUUCGUuGUGGug------CAGGaGc -5'
5312 3' -56 NC_001798.1 + 131340 0.66 0.913592
Target:  5'- cGCGCCccGGgcGCGacgucgGCGCCcgGCGcggCCUCGg -3'
miRNA:   3'- -CGCGG--CCuuCGU------UGUGG--UGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 154094 0.66 0.913592
Target:  5'- aGCGCCGGGGcGCGgccgGCGCCGgGgacCC-CGg -3'
miRNA:   3'- -CGCGGCCUU-CGU----UGUGGUgCa--GGaGC- -5'
5312 3' -56 NC_001798.1 + 134361 0.66 0.913592
Target:  5'- gGCGUCGuGggGCccGCcgGCCGC-UCCUCGc -3'
miRNA:   3'- -CGCGGC-CuuCGu-UG--UGGUGcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 150158 0.66 0.913592
Target:  5'- cGCGCCucuuccGGggGCGGgcCGCCGCccCCUCc -3'
miRNA:   3'- -CGCGG------CCuuCGUU--GUGGUGcaGGAGc -5'
5312 3' -56 NC_001798.1 + 153753 0.66 0.913008
Target:  5'- aGCGCCagguggggcggaaGGggGCGcuGCGgcCCGCGcUCCUUGc -3'
miRNA:   3'- -CGCGG-------------CCuuCGU--UGU--GGUGC-AGGAGC- -5'
5312 3' -56 NC_001798.1 + 85493 0.66 0.913008
Target:  5'- aGUGCCuGGgcGCGccccacuGCGCCGCGagcaUCUUCGu -3'
miRNA:   3'- -CGCGG-CCuuCGU-------UGUGGUGC----AGGAGC- -5'
5312 3' -56 NC_001798.1 + 79681 0.66 0.911833
Target:  5'- uGCGuCCcGAGGCGGCcugcgugcgGCCcccgcuuccgacggACGUCCUCGa -3'
miRNA:   3'- -CGC-GGcCUUCGUUG---------UGG--------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 15210 0.66 0.907648
Target:  5'- -aGCCGGggGgAGCGuCCGCGggUCCgugUGg -3'
miRNA:   3'- cgCGGCCuuCgUUGU-GGUGC--AGGa--GC- -5'
5312 3' -56 NC_001798.1 + 1712 0.66 0.907648
Target:  5'- cGCgGCCGGAGGcCAGCACggugcggcgCAgGUCC-CGc -3'
miRNA:   3'- -CG-CGGCCUUC-GUUGUG---------GUgCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 109370 0.66 0.907648
Target:  5'- cCGCCcgGGGAGCAgcggGCugCGCGgccgaCUCGg -3'
miRNA:   3'- cGCGG--CCUUCGU----UGugGUGCag---GAGC- -5'
5312 3' -56 NC_001798.1 + 116506 0.66 0.907648
Target:  5'- gGUGCCGGccuucucgcggGGGCGcugcuGCACCGCGgggguccgCUUCGa -3'
miRNA:   3'- -CGCGGCC-----------UUCGU-----UGUGGUGCa-------GGAGC- -5'
5312 3' -56 NC_001798.1 + 152093 0.66 0.907648
Target:  5'- cGgGCCGGggGuCGGCcCCgucaaGCGUCCcCGc -3'
miRNA:   3'- -CgCGGCCuuC-GUUGuGG-----UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 19985 0.66 0.907648
Target:  5'- cCGCCGGAcGCGGauuCCGgGUUCUCc -3'
miRNA:   3'- cGCGGCCUuCGUUgu-GGUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 52499 0.66 0.907648
Target:  5'- cGCGCCGGcgcaGGGaCGACGCgGCGgCCgcgCGc -3'
miRNA:   3'- -CGCGGCC----UUC-GUUGUGgUGCaGGa--GC- -5'
5312 3' -56 NC_001798.1 + 62563 0.66 0.907648
Target:  5'- uCGCCGGAcGuCGcCGCCACGUCaUCc -3'
miRNA:   3'- cGCGGCCUuC-GUuGUGGUGCAGgAGc -5'
5312 3' -56 NC_001798.1 + 75597 0.66 0.907648
Target:  5'- cGUGCUGGAcgaaaauucGCAgaucggGCGCCugGcCCUCGc -3'
miRNA:   3'- -CGCGGCCUu--------CGU------UGUGGugCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 4215 0.66 0.901474
Target:  5'- gGCGCuggCGGggGCGcGgGCgGCGUCgUCGu -3'
miRNA:   3'- -CGCG---GCCuuCGU-UgUGgUGCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 135335 0.66 0.901474
Target:  5'- gGUGCCGGAcgcguGCGACGCCugccccGCGcUCCg-- -3'
miRNA:   3'- -CGCGGCCUu----CGUUGUGG------UGC-AGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.