miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5313 3' -55.3 NC_001798.1 + 57002 0.66 0.91281
Target:  5'- gACgGAGGGCGGaaCACG-CGAACgCGCAc -3'
miRNA:   3'- gUG-CUCCUGCC--GUGCaGUUUG-GCGUa -5'
5313 3' -55.3 NC_001798.1 + 85088 0.66 0.91281
Target:  5'- gCugGaAGGAgGGCGCGuUCGAGcguCCGUAUg -3'
miRNA:   3'- -GugC-UCCUgCCGUGC-AGUUU---GGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 24823 0.66 0.91281
Target:  5'- gCGCGGGGACcuGCGCGUgGccGGCgGCAg -3'
miRNA:   3'- -GUGCUCCUGc-CGUGCAgU--UUGgCGUa -5'
5313 3' -55.3 NC_001798.1 + 124575 0.66 0.906727
Target:  5'- gGgGAGGGCGGCAcCGgggaaaCAGgcACCGCGg -3'
miRNA:   3'- gUgCUCCUGCCGU-GCa-----GUU--UGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 88670 0.66 0.906727
Target:  5'- cCACcAGGcccGCGGC-CGUgAGGCCGCGg -3'
miRNA:   3'- -GUGcUCC---UGCCGuGCAgUUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 128864 0.66 0.906727
Target:  5'- gUACGAGGACcugauGGCGCGgCGAucGCCGgAg -3'
miRNA:   3'- -GUGCUCCUG-----CCGUGCaGUU--UGGCgUa -5'
5313 3' -55.3 NC_001798.1 + 9092 0.67 0.900405
Target:  5'- gGCGuGGAgGGcCACGggaaAGGCCGCGg -3'
miRNA:   3'- gUGCuCCUgCC-GUGCag--UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 36110 0.67 0.893847
Target:  5'- gGgGGGGGCccGGCuGCGUCucGCCGCGa -3'
miRNA:   3'- gUgCUCCUG--CCG-UGCAGuuUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 22301 0.67 0.887057
Target:  5'- aGCGGcGGCGGCGCGaccaaCGGGCCGCc- -3'
miRNA:   3'- gUGCUcCUGCCGUGCa----GUUUGGCGua -5'
5313 3' -55.3 NC_001798.1 + 85219 0.67 0.882873
Target:  5'- gACGAGGACGuggagaGCgACGUCGcgcccgcccccccgcGGCCGCGc -3'
miRNA:   3'- gUGCUCCUGC------CG-UGCAGU---------------UUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 15906 0.67 0.872795
Target:  5'- gGCGGGGugGGaaggggGCGUaCGGACCGuCAUc -3'
miRNA:   3'- gUGCUCCugCCg-----UGCA-GUUUGGC-GUA- -5'
5313 3' -55.3 NC_001798.1 + 69 0.67 0.872795
Target:  5'- gGCGGGcGGCGGCGgCGggCGGGCgGCAg -3'
miRNA:   3'- gUGCUC-CUGCCGU-GCa-GUUUGgCGUa -5'
5313 3' -55.3 NC_001798.1 + 105389 0.67 0.872795
Target:  5'- cCugGAGGGCGGCGuucuccagggcCGcCGcGGCCGCGg -3'
miRNA:   3'- -GugCUCCUGCCGU-----------GCaGU-UUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 154407 0.67 0.872795
Target:  5'- gGCGGGcGGCGGCGgCGggCGGGCgGCAg -3'
miRNA:   3'- gUGCUC-CUGCCGU-GCa-GUUUGgCGUa -5'
5313 3' -55.3 NC_001798.1 + 20881 0.67 0.872795
Target:  5'- gGgGAGGACGGgGCGUCugcgcuuCCGUg- -3'
miRNA:   3'- gUgCUCCUGCCgUGCAGuuu----GGCGua -5'
5313 3' -55.3 NC_001798.1 + 52637 0.67 0.865334
Target:  5'- -cCGAGGugGGCACGUaCAcccccCUGCGc -3'
miRNA:   3'- guGCUCCugCCGUGCA-GUuu---GGCGUa -5'
5313 3' -55.3 NC_001798.1 + 66897 0.67 0.865334
Target:  5'- cCACGGGGGCGGgGcCGUCGcuccauCUGCGa -3'
miRNA:   3'- -GUGCUCCUGCCgU-GCAGUuu----GGCGUa -5'
5313 3' -55.3 NC_001798.1 + 9129 0.67 0.864575
Target:  5'- cCGCGAGGuggucuGCGGCACG-CGGgcgcggcGCCGCc- -3'
miRNA:   3'- -GUGCUCC------UGCCGUGCaGUU-------UGGCGua -5'
5313 3' -55.3 NC_001798.1 + 15872 0.68 0.857659
Target:  5'- -uCGGGGucuguccgcAgGGCGCGUCgAAACCGCGg -3'
miRNA:   3'- guGCUCC---------UgCCGUGCAG-UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 77733 0.68 0.849777
Target:  5'- -uCGAGG-CGGCgcuggaccGCGUCGAgaACCGCGc -3'
miRNA:   3'- guGCUCCuGCCG--------UGCAGUU--UGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.