miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5313 5' -55 NC_001798.1 + 3361 0.76 0.534145
Target:  5'- gUCGUGGCGguugGCGucgccGCCGUCGUCGgGGg -3'
miRNA:   3'- -GGUACCGCa---UGCc----UGGCAGCAGCaCC- -5'
5313 5' -55 NC_001798.1 + 4021 0.68 0.908561
Target:  5'- cCCGUGGCGUcGCGGccggccACCGcCG-CGcGGg -3'
miRNA:   3'- -GGUACCGCA-UGCC------UGGCaGCaGCaCC- -5'
5313 5' -55 NC_001798.1 + 4219 0.68 0.919999
Target:  5'- --cUGGCGggggcGCGGGCggCGUCGUCGUc- -3'
miRNA:   3'- gguACCGCa----UGCCUG--GCAGCAGCAcc -5'
5313 5' -55 NC_001798.1 + 4441 0.7 0.812789
Target:  5'- gCCAUGGgGUccggguacgccccGCGGACCGcggaCGUCGUc- -3'
miRNA:   3'- -GGUACCgCA-------------UGCCUGGCa---GCAGCAcc -5'
5313 5' -55 NC_001798.1 + 5388 0.69 0.889726
Target:  5'- uCCGUGGCG-GCGGcCCGUUGgUCGc-- -3'
miRNA:   3'- -GGUACCGCaUGCCuGGCAGC-AGCacc -5'
5313 5' -55 NC_001798.1 + 10134 1.13 0.002902
Target:  5'- uCCAUGGCGUACGGACCGUCGUCGUGGg -3'
miRNA:   3'- -GGUACCGCAUGCCUGGCAGCAGCACC- -5'
5313 5' -55 NC_001798.1 + 11970 0.67 0.940142
Target:  5'- uCCAgGGCGgauagGCgGGGCUGUgGgCGUGGu -3'
miRNA:   3'- -GGUaCCGCa----UG-CCUGGCAgCaGCACC- -5'
5313 5' -55 NC_001798.1 + 15921 0.74 0.613032
Target:  5'- ---gGGCGUACGGACCGUCaUCuagGGc -3'
miRNA:   3'- gguaCCGCAUGCCUGGCAGcAGca-CC- -5'
5313 5' -55 NC_001798.1 + 19171 0.76 0.504485
Target:  5'- aCCGUGGCcccugcccgaucgGUuuuugcccgaGCGGACCGU-GUCGUGGa -3'
miRNA:   3'- -GGUACCG-------------CA----------UGCCUGGCAgCAGCACC- -5'
5313 5' -55 NC_001798.1 + 24164 0.74 0.63302
Target:  5'- gCCAUGGCG-GCGGGCCG-CuUCGgcugGGg -3'
miRNA:   3'- -GGUACCGCaUGCCUGGCaGcAGCa---CC- -5'
5313 5' -55 NC_001798.1 + 24573 0.68 0.908561
Target:  5'- gCCGgcgcGCGgagGCGGGCCG-CGUggcCGUGGa -3'
miRNA:   3'- -GGUac--CGCa--UGCCUGGCaGCA---GCACC- -5'
5313 5' -55 NC_001798.1 + 30775 0.71 0.805054
Target:  5'- ---cGGcCGUGCGGGCCGgcaCGgcCGUGGa -3'
miRNA:   3'- gguaCC-GCAUGCCUGGCa--GCa-GCACC- -5'
5313 5' -55 NC_001798.1 + 32556 0.75 0.592103
Target:  5'- aCGUGGCGgaccugcUGCGGGCCG-CGgcccccgCGUGGa -3'
miRNA:   3'- gGUACCGC-------AUGCCUGGCaGCa------GCACC- -5'
5313 5' -55 NC_001798.1 + 36143 0.67 0.94461
Target:  5'- gCCGguggGGCGcgGCGG-CgGUCGggGUGGg -3'
miRNA:   3'- -GGUa---CCGCa-UGCCuGgCAGCagCACC- -5'
5313 5' -55 NC_001798.1 + 36835 0.74 0.603055
Target:  5'- ---cGGCGUGgGGACCGgcugUGUgGUGGg -3'
miRNA:   3'- gguaCCGCAUgCCUGGCa---GCAgCACC- -5'
5313 5' -55 NC_001798.1 + 44643 0.71 0.796318
Target:  5'- gCCAUugGGCGcauCGGACCGguacgCGUCGUa- -3'
miRNA:   3'- -GGUA--CCGCau-GCCUGGCa----GCAGCAcc -5'
5313 5' -55 NC_001798.1 + 51598 0.75 0.583168
Target:  5'- cCCGUGuccggauagcGCGUuCGGGCUGUCGcgCGUGGg -3'
miRNA:   3'- -GGUAC----------CGCAuGCCUGGCAGCa-GCACC- -5'
5313 5' -55 NC_001798.1 + 52211 0.65 0.969793
Target:  5'- uCC-UGGCGgagcagACGGuCCaguggcucucgGUgGUCGUGGg -3'
miRNA:   3'- -GGuACCGCa-----UGCCuGG-----------CAgCAGCACC- -5'
5313 5' -55 NC_001798.1 + 59054 0.67 0.935448
Target:  5'- aCAUGGCGUccgcauACGGGCCG-CG-CGa-- -3'
miRNA:   3'- gGUACCGCA------UGCCUGGCaGCaGCacc -5'
5313 5' -55 NC_001798.1 + 74402 0.68 0.914393
Target:  5'- gCCGUGGCGccgGCGGACCugacCGcCGcGGc -3'
miRNA:   3'- -GGUACCGCa--UGCCUGGca--GCaGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.