miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5314 5' -57.9 NC_001798.1 + 28873 0.67 0.772686
Target:  5'- gGCC-GGCGGa--GCCCcGGAGCUc- -3'
miRNA:   3'- gCGGuCCGCCaugCGGGuCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 105614 0.67 0.772686
Target:  5'- gCGgCGGGCGGgcgacgacgGCGCuCCGGGAAg--- -3'
miRNA:   3'- -GCgGUCCGCCa--------UGCG-GGUCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 77569 0.67 0.769884
Target:  5'- gGCCGGggaccauucccccaGCGGgcGCGCCCugcAGGAGCUg- -3'
miRNA:   3'- gCGGUC--------------CGCCa-UGCGGG---UCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 25580 0.67 0.769884
Target:  5'- uGCCGGGCgaggaccuggccgcGGgcCGCgCCGGGGGCg-- -3'
miRNA:   3'- gCGGUCCG--------------CCauGCG-GGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 104103 0.67 0.753809
Target:  5'- cCGCCuGGCGG-GCGCCCGacGACa-- -3'
miRNA:   3'- -GCGGuCCGCCaUGCGGGUccUUGaau -5'
5314 5' -57.9 NC_001798.1 + 47085 0.67 0.753809
Target:  5'- gCGCCGGuGUGGUGucCGuCCCGGGggUc-- -3'
miRNA:   3'- -GCGGUC-CGCCAU--GC-GGGUCCuuGaau -5'
5314 5' -57.9 NC_001798.1 + 109687 0.67 0.752853
Target:  5'- gCGCCGuuccuGGCGGgcGCGCCCucggccgagcagcGGGAACg-- -3'
miRNA:   3'- -GCGGU-----CCGCCa-UGCGGG-------------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 22955 0.67 0.744207
Target:  5'- uGCCgacgAGGCGGccccgGCGUCCGGGGAg--- -3'
miRNA:   3'- gCGG----UCCGCCa----UGCGGGUCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 66375 0.67 0.744207
Target:  5'- aGgCGGGCGGaccgcCGCaCCAGGggUUUGa -3'
miRNA:   3'- gCgGUCCGCCau---GCG-GGUCCuuGAAU- -5'
5314 5' -57.9 NC_001798.1 + 102235 0.68 0.734507
Target:  5'- gGCUcgGGGCGGgccuCGCCCGGGuaauACg-- -3'
miRNA:   3'- gCGG--UCCGCCau--GCGGGUCCu---UGaau -5'
5314 5' -57.9 NC_001798.1 + 24462 0.68 0.734507
Target:  5'- gCGCCGcGGgGGUGCucgccGCCCuGGGGCg-- -3'
miRNA:   3'- -GCGGU-CCgCCAUG-----CGGGuCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 85837 0.68 0.72472
Target:  5'- gGgCGGGCGGgg-GCUCGGGAACg-- -3'
miRNA:   3'- gCgGUCCGCCaugCGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 69096 0.68 0.714853
Target:  5'- cCGCCcggaccccaGGGCGGagGCcUCCAGGAGCUg- -3'
miRNA:   3'- -GCGG---------UCCGCCa-UGcGGGUCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 1532 0.68 0.714853
Target:  5'- gCGCCGggagcacggcgcGGCGGUAcuCGCgCGGGGACa-- -3'
miRNA:   3'- -GCGGU------------CCGCCAU--GCGgGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 36595 0.68 0.714853
Target:  5'- gGCCGGGCGGggGCGCgCggcggccgggcGGGGGCg-- -3'
miRNA:   3'- gCGGUCCGCCa-UGCGgG-----------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 36553 0.68 0.714853
Target:  5'- gGCCGGGCGGggGCGCgCggcggccgggcGGGGGCg-- -3'
miRNA:   3'- gCGGUCCGCCa-UGCGgG-----------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 36511 0.68 0.714853
Target:  5'- gGCCGGGCGGggGCGCgCggcggccgggcGGGGGCg-- -3'
miRNA:   3'- gCGGUCCGCCa-UGCGgG-----------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 48184 0.68 0.704917
Target:  5'- aCGCCcggcuggcGGCGGUACaGCUguGGGACa-- -3'
miRNA:   3'- -GCGGu-------CCGCCAUG-CGGguCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 111419 0.68 0.704917
Target:  5'- gGCCAGcGCGGccccgagaaACGCCCGcGGAGCc-- -3'
miRNA:   3'- gCGGUC-CGCCa--------UGCGGGU-CCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 153389 0.68 0.69492
Target:  5'- gCGCCGGaaccggucGCGGUcggcccgcucgcGCGCCCAGGAc---- -3'
miRNA:   3'- -GCGGUC--------CGCCA------------UGCGGGUCCUugaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.