miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 3' -58.5 NC_001798.1 + 67554 0.66 0.833159
Target:  5'- cGUGGucgccgccAGGGGGGGcgaccUCGGG-CUC-CCGg -3'
miRNA:   3'- aCACC--------UCCCUCUC-----AGCCCaGAGaGGC- -5'
5315 3' -58.5 NC_001798.1 + 100788 0.66 0.824136
Target:  5'- aGUGGGGGGcgGGuGUCGGccGUCUCgggcgugUCCu -3'
miRNA:   3'- aCACCUCCC--UCuCAGCC--CAGAG-------AGGc -5'
5315 3' -58.5 NC_001798.1 + 27552 0.66 0.816603
Target:  5'- --cGGGGGGAGGGgcggcgcccgCGGGggagCggccggCUCCGg -3'
miRNA:   3'- acaCCUCCCUCUCa---------GCCCa---Ga-----GAGGC- -5'
5315 3' -58.5 NC_001798.1 + 30064 0.67 0.77256
Target:  5'- --gGGGGGGAGAcGagGGGUCggaaUCCa -3'
miRNA:   3'- acaCCUCCCUCU-CagCCCAGag--AGGc -5'
5315 3' -58.5 NC_001798.1 + 36106 0.67 0.77256
Target:  5'- gGUGGGGGGGGGccCGGcugcGUCUCgCCGc -3'
miRNA:   3'- aCACCUCCCUCUcaGCC----CAGAGaGGC- -5'
5315 3' -58.5 NC_001798.1 + 16227 0.68 0.71587
Target:  5'- cUGUGGGGGGgcgguGGGGcCGGGgccCUCcCCGc -3'
miRNA:   3'- -ACACCUCCC-----UCUCaGCCCa--GAGaGGC- -5'
5315 3' -58.5 NC_001798.1 + 10311 0.69 0.666677
Target:  5'- --cGGGGGGGGGGUUGGGgggggaacgCUgaCCGg -3'
miRNA:   3'- acaCCUCCCUCUCAGCCCa--------GAgaGGC- -5'
5315 3' -58.5 NC_001798.1 + 106001 0.7 0.626791
Target:  5'- cUGgGGAGGGGGGGUCG---CUCUCUGg -3'
miRNA:   3'- -ACaCCUCCCUCUCAGCccaGAGAGGC- -5'
5315 3' -58.5 NC_001798.1 + 35808 0.7 0.606841
Target:  5'- cGgcgGGGGGGGGGcGUCGGGaCUCgcggagggCCGg -3'
miRNA:   3'- aCa--CCUCCCUCU-CAGCCCaGAGa-------GGC- -5'
5315 3' -58.5 NC_001798.1 + 36168 0.7 0.596889
Target:  5'- gGUGGGGGGAGAGUgucgUGGGUgUguUUUCGu -3'
miRNA:   3'- aCACCUCCCUCUCA----GCCCAgA--GAGGC- -5'
5315 3' -58.5 NC_001798.1 + 11659 0.74 0.393509
Target:  5'- --cGGGGGcGGGGGUCGGGUCUCg--- -3'
miRNA:   3'- acaCCUCC-CUCUCAGCCCAGAGaggc -5'
5315 3' -58.5 NC_001798.1 + 5089 0.75 0.346175
Target:  5'- aGUGGGGGGGGguGGUUGGcaGUCUCUCUc -3'
miRNA:   3'- aCACCUCCCUC--UCAGCC--CAGAGAGGc -5'
5315 3' -58.5 NC_001798.1 + 11706 0.82 0.127076
Target:  5'- cGUGGAGGGGuGGGUCGGGaggCUCCGg -3'
miRNA:   3'- aCACCUCCCU-CUCAGCCCagaGAGGC- -5'
5315 3' -58.5 NC_001798.1 + 9410 1.09 0.001814
Target:  5'- uUGUGGAGGGAGAGUCGGGUCUCUCCGg -3'
miRNA:   3'- -ACACCUCCCUCUCAGCCCAGAGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.