miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 3' -57.6 NC_001798.1 + 125105 0.66 0.841715
Target:  5'- cGGGGGGCC-CGuagucuccGCGAGACuagAGGCc--- -3'
miRNA:   3'- -CCUCCCGGuGC--------UGCUCUG---UCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 120553 0.66 0.840913
Target:  5'- cGGGGGCCAUcaggccgcuguugGugGugguGGAgGGGCGGUAc -3'
miRNA:   3'- cCUCCCGGUG-------------CugC----UCUgUCCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 23683 0.66 0.83361
Target:  5'- uGGccGGCCGCGACGccACGGGCc--- -3'
miRNA:   3'- -CCucCCGGUGCUGCucUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 26194 0.66 0.83361
Target:  5'- uGGAcggccGGGCCGCcgccuCGGGcGCGGGCGAc- -3'
miRNA:   3'- -CCU-----CCCGGUGcu---GCUC-UGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 29397 0.66 0.83361
Target:  5'- -cAGGGCCGCGccgGCGGGGCgccgGGGgGAc- -3'
miRNA:   3'- ccUCCCGGUGC---UGCUCUG----UCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 37194 0.66 0.83361
Target:  5'- -cAGGcGCCGCGcCGAacGACGGGCGcgGc -3'
miRNA:   3'- ccUCC-CGGUGCuGCU--CUGUCCGCuaU- -5'
5316 3' -57.6 NC_001798.1 + 97474 0.66 0.83361
Target:  5'- uGGGGGCCgGCGGCGcGACcGGGgGGg- -3'
miRNA:   3'- cCUCCCGG-UGCUGCuCUG-UCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 104546 0.66 0.83361
Target:  5'- cGGuGGGCCACGucguCGGGguucacGCGGGUGcUGg -3'
miRNA:   3'- -CCuCCCGGUGCu---GCUC------UGUCCGCuAU- -5'
5316 3' -57.6 NC_001798.1 + 150085 0.66 0.83361
Target:  5'- uGGGGGGCgaGgGGCGAGcGCGgGGCGGc- -3'
miRNA:   3'- -CCUCCCGg-UgCUGCUC-UGU-CCGCUau -5'
5316 3' -57.6 NC_001798.1 + 40726 0.66 0.831143
Target:  5'- ---cGGCCACGACGGcGAUAuagcacaggcgcacGGCGAUAc -3'
miRNA:   3'- ccucCCGGUGCUGCU-CUGU--------------CCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 15197 0.67 0.825326
Target:  5'- gGGGGGGCU--GGCGAGcCGGGgGGa- -3'
miRNA:   3'- -CCUCCCGGugCUGCUCuGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 25601 0.67 0.825326
Target:  5'- --cGGGCCGCGcCgGGGGCGGGCc--- -3'
miRNA:   3'- ccuCCCGGUGCuG-CUCUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 127924 0.67 0.825326
Target:  5'- cGuGGGCaacccgACGGCGGGGCcccGGGCGAa- -3'
miRNA:   3'- cCuCCCGg-----UGCUGCUCUG---UCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 146285 0.67 0.825326
Target:  5'- cGGAGaGGCCgaGCGGgGAG-UGGGCGGc- -3'
miRNA:   3'- -CCUC-CCGG--UGCUgCUCuGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 150569 0.67 0.816871
Target:  5'- -cGGGGCC-CG-CGGGGCGGcGCGGa- -3'
miRNA:   3'- ccUCCCGGuGCuGCUCUGUC-CGCUau -5'
5316 3' -57.6 NC_001798.1 + 118919 0.67 0.816871
Target:  5'- cGAGGGCCagGCGACG-GACGuGCGc-- -3'
miRNA:   3'- cCUCCCGG--UGCUGCuCUGUcCGCuau -5'
5316 3' -57.6 NC_001798.1 + 35421 0.67 0.816871
Target:  5'- cGGGGGCCuaauGCGGCGGGA--GGCGu-- -3'
miRNA:   3'- cCUCCCGG----UGCUGCUCUguCCGCuau -5'
5316 3' -57.6 NC_001798.1 + 150171 0.67 0.816871
Target:  5'- gGGGcGGGCCgccgcccccuccGCGGCGuGGgGGGCGGc- -3'
miRNA:   3'- -CCU-CCCGG------------UGCUGCuCUgUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 35834 0.67 0.816871
Target:  5'- cGGAGGGCCGgaGAauGGA-AGGCGAg- -3'
miRNA:   3'- -CCUCCCGGUg-CUgcUCUgUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 34620 0.67 0.816871
Target:  5'- aGGGcGGCgGCGGCGGGGgGGGgGGg- -3'
miRNA:   3'- cCUC-CCGgUGCUGCUCUgUCCgCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.