miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 5' -64.1 NC_001798.1 + 55830 0.66 0.591484
Target:  5'- aCGCAucCCGCGUugaauuccuGCcaGCCGCUGUcgcaCGGCGa -3'
miRNA:   3'- -GCGU--GGCGCA---------CG--CGGCGGCA----GCCGCg -5'
5316 5' -64.1 NC_001798.1 + 100061 0.66 0.585771
Target:  5'- aGCGCCaCGUgaaugacaugcugggGCGCauCGCCGUCgcguGGUGCg -3'
miRNA:   3'- gCGUGGcGCA---------------CGCG--GCGGCAG----CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 77205 0.66 0.581968
Target:  5'- cCGCGgCGaCGgugGaCGCgGCCGUgCGGgCGCa -3'
miRNA:   3'- -GCGUgGC-GCa--C-GCGgCGGCA-GCC-GCG- -5'
5316 5' -64.1 NC_001798.1 + 147024 0.66 0.581968
Target:  5'- gCGgGCCGgG-GCuugGCCGCCGagGuGCGCc -3'
miRNA:   3'- -GCgUGGCgCaCG---CGGCGGCagC-CGCG- -5'
5316 5' -64.1 NC_001798.1 + 61198 0.66 0.581968
Target:  5'- uGCACCG---GCGCgCGCCGgCGGuUGCa -3'
miRNA:   3'- gCGUGGCgcaCGCG-GCGGCaGCC-GCG- -5'
5316 5' -64.1 NC_001798.1 + 31672 0.66 0.581968
Target:  5'- gGC-CCGCGccGC-CCGCCGUgcCGGUGg -3'
miRNA:   3'- gCGuGGCGCa-CGcGGCGGCA--GCCGCg -5'
5316 5' -64.1 NC_001798.1 + 21724 0.66 0.581968
Target:  5'- gCGCAgCCG-GUGUGCCcCUGgugCGGCGg -3'
miRNA:   3'- -GCGU-GGCgCACGCGGcGGCa--GCCGCg -5'
5316 5' -64.1 NC_001798.1 + 1441 0.66 0.581018
Target:  5'- gCGCGgUGCGagUGCGCC-UCGUCcucgcagaaguccGGCGCg -3'
miRNA:   3'- -GCGUgGCGC--ACGCGGcGGCAG-------------CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 123396 0.66 0.579119
Target:  5'- aCGCcaggccccccgggaGCCGCG-GCcCCGCCGggucacCGGgGCg -3'
miRNA:   3'- -GCG--------------UGGCGCaCGcGGCGGCa-----GCCgCG- -5'
5316 5' -64.1 NC_001798.1 + 122432 0.66 0.575326
Target:  5'- uGUGCCGCcgagcgcgucGUGCGCCcccaccaGCUGUCccccgcggcccagacGGCGCu -3'
miRNA:   3'- gCGUGGCG----------CACGCGG-------CGGCAG---------------CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 153909 0.66 0.572484
Target:  5'- gCGUAguCCGCGU-CGUCGCUGUCGucCGCc -3'
miRNA:   3'- -GCGU--GGCGCAcGCGGCGGCAGCc-GCG- -5'
5316 5' -64.1 NC_001798.1 + 110901 0.66 0.572484
Target:  5'- gCGguUCGCGUGCGgccagccgcccCCGCCGgcccgCGGUcaaacGCg -3'
miRNA:   3'- -GCguGGCGCACGC-----------GGCGGCa----GCCG-----CG- -5'
5316 5' -64.1 NC_001798.1 + 94552 0.66 0.572484
Target:  5'- aGCGCCaacGCGUccGagGCCGCCaa-GGCGCg -3'
miRNA:   3'- gCGUGG---CGCA--Cg-CGGCGGcagCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 47791 0.66 0.572484
Target:  5'- gCGCgACCGCGUcguucgGCGuCCGUCG-CGG-GCu -3'
miRNA:   3'- -GCG-UGGCGCA------CGC-GGCGGCaGCCgCG- -5'
5316 5' -64.1 NC_001798.1 + 53404 0.66 0.572484
Target:  5'- gGCACuaCGCGUcgGCCGCCaagcaGGCGCu -3'
miRNA:   3'- gCGUG--GCGCAcgCGGCGGcag--CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 97898 0.66 0.571537
Target:  5'- gCGCACCgguucauGCGaGCGUCGCUG-CuGCGCc -3'
miRNA:   3'- -GCGUGG-------CGCaCGCGGCGGCaGcCGCG- -5'
5316 5' -64.1 NC_001798.1 + 81104 0.66 0.569645
Target:  5'- -uCGCgGCGaGCGCCGCCGaCGcggaccccuucuucGCGCg -3'
miRNA:   3'- gcGUGgCGCaCGCGGCGGCaGC--------------CGCG- -5'
5316 5' -64.1 NC_001798.1 + 47667 0.66 0.563037
Target:  5'- -cCGCCGCG-GCGCUGgcCCGaugCGcGCGCg -3'
miRNA:   3'- gcGUGGCGCaCGCGGC--GGCa--GC-CGCG- -5'
5316 5' -64.1 NC_001798.1 + 90387 0.66 0.563037
Target:  5'- -aCGCCGuCGggggGCGCgGuuGggcCGGCGCg -3'
miRNA:   3'- gcGUGGC-GCa---CGCGgCggCa--GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 84993 0.66 0.563037
Target:  5'- uCGCGgaCGCGUGCGCC-CCGcucgacCGGCcaugGCg -3'
miRNA:   3'- -GCGUg-GCGCACGCGGcGGCa-----GCCG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.