miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5317 3' -60.8 NC_001798.1 + 8276 1.1 0.000823
Target:  5'- aACUGGGGUACUGCACUGCCCCCCUCCu -3'
miRNA:   3'- -UGACCCCAUGACGUGACGGGGGGAGG- -5'
5317 3' -60.8 NC_001798.1 + 8399 0.86 0.044073
Target:  5'- aACUGGGuUACUGCACuUGCCCCCCcCCg -3'
miRNA:   3'- -UGACCCcAUGACGUG-ACGGGGGGaGG- -5'
5317 3' -60.8 NC_001798.1 + 15262 0.69 0.49027
Target:  5'- --gGGGGUACggGCGgUGCCCCgggUUCCg -3'
miRNA:   3'- ugaCCCCAUGa-CGUgACGGGGg--GAGG- -5'
5317 3' -60.8 NC_001798.1 + 16188 0.71 0.418857
Target:  5'- gACcGGGGggAC-GCACggGCCgCCCUCCg -3'
miRNA:   3'- -UGaCCCCa-UGaCGUGa-CGGgGGGAGG- -5'
5317 3' -60.8 NC_001798.1 + 24484 0.7 0.453802
Target:  5'- cCUGGGGcGCcugaGCGCcgcGCCCgCCUCCg -3'
miRNA:   3'- uGACCCCaUGa---CGUGa--CGGGgGGAGG- -5'
5317 3' -60.8 NC_001798.1 + 27608 0.67 0.636167
Target:  5'- --aGGGGgcgcgcgggGCUGCcCUGCCgCCCgcccgCCg -3'
miRNA:   3'- ugaCCCCa--------UGACGuGACGGgGGGa----GG- -5'
5317 3' -60.8 NC_001798.1 + 29980 0.66 0.715012
Target:  5'- --cGGGGgACccccgugggccgUGCGCcGCCCCCCgacCCu -3'
miRNA:   3'- ugaCCCCaUG------------ACGUGaCGGGGGGa--GG- -5'
5317 3' -60.8 NC_001798.1 + 32476 0.67 0.646114
Target:  5'- cACgGGGG-ACUGC-CUGCCCgUCCUg- -3'
miRNA:   3'- -UGaCCCCaUGACGuGACGGG-GGGAgg -5'
5317 3' -60.8 NC_001798.1 + 43332 0.73 0.296788
Target:  5'- uCUGGGGgGCgGCAgUGCCgCCCC-CCg -3'
miRNA:   3'- uGACCCCaUGaCGUgACGG-GGGGaGG- -5'
5317 3' -60.8 NC_001798.1 + 49265 0.69 0.537661
Target:  5'- gACUGGGGggaUGCGCacGUCCCCgagcgCUCCc -3'
miRNA:   3'- -UGACCCCaugACGUGa-CGGGGG-----GAGG- -5'
5317 3' -60.8 NC_001798.1 + 50270 0.75 0.252756
Target:  5'- uGCUGGGGgAC-GUGgaGUCCCCCUCCc -3'
miRNA:   3'- -UGACCCCaUGaCGUgaCGGGGGGAGG- -5'
5317 3' -60.8 NC_001798.1 + 50396 0.66 0.679809
Target:  5'- --gGGGGUaggaugugcgaccggGCgGCGC-GCCCCCCcCCc -3'
miRNA:   3'- ugaCCCCA---------------UGaCGUGaCGGGGGGaGG- -5'
5317 3' -60.8 NC_001798.1 + 51629 0.7 0.481021
Target:  5'- cGCgugGGGGUcaUGCACuuUGCCuCCCCggCCg -3'
miRNA:   3'- -UGa--CCCCAugACGUG--ACGG-GGGGa-GG- -5'
5317 3' -60.8 NC_001798.1 + 52016 0.72 0.361822
Target:  5'- cGCUGGGGUcccuGCUGUACUGgCCCggggugcgcgCgCUCCu -3'
miRNA:   3'- -UGACCCCA----UGACGUGACgGGG----------G-GAGG- -5'
5317 3' -60.8 NC_001798.1 + 55078 0.7 0.471858
Target:  5'- gACUGGGGcg--GguCUGCCCUCUUCUc -3'
miRNA:   3'- -UGACCCCaugaCguGACGGGGGGAGG- -5'
5317 3' -60.8 NC_001798.1 + 60213 0.68 0.557068
Target:  5'- cCUGGgcgcuGGUGCUGgACgacgcGCCCUCCUCg -3'
miRNA:   3'- uGACC-----CCAUGACgUGa----CGGGGGGAGg -5'
5317 3' -60.8 NC_001798.1 + 71408 0.77 0.176502
Target:  5'- gGCgGGGGUGCccGCGCggacGCCCCCCggCCa -3'
miRNA:   3'- -UGaCCCCAUGa-CGUGa---CGGGGGGa-GG- -5'
5317 3' -60.8 NC_001798.1 + 72334 0.66 0.69945
Target:  5'- --gGGGGUGCUGCaggagcucgccgagcGCgccGaCCCCCUggUCCg -3'
miRNA:   3'- ugaCCCCAUGACG---------------UGa--C-GGGGGG--AGG- -5'
5317 3' -60.8 NC_001798.1 + 75188 0.69 0.518493
Target:  5'- cGCUGGGGgcc--CGCcGCCCCCCggagCCc -3'
miRNA:   3'- -UGACCCCaugacGUGaCGGGGGGa---GG- -5'
5317 3' -60.8 NC_001798.1 + 76820 0.66 0.665969
Target:  5'- --aGGGGUcCUGCg--GCCCCUC-CCg -3'
miRNA:   3'- ugaCCCCAuGACGugaCGGGGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.