Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5317 | 3' | -60.8 | NC_001798.1 | + | 51629 | 0.7 | 0.481021 |
Target: 5'- cGCgugGGGGUcaUGCACuuUGCCuCCCCggCCg -3' miRNA: 3'- -UGa--CCCCAugACGUG--ACGG-GGGGa-GG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 55078 | 0.7 | 0.471858 |
Target: 5'- gACUGGGGcg--GguCUGCCCUCUUCUc -3' miRNA: 3'- -UGACCCCaugaCguGACGGGGGGAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 24484 | 0.7 | 0.453802 |
Target: 5'- cCUGGGGcGCcugaGCGCcgcGCCCgCCUCCg -3' miRNA: 3'- uGACCCCaUGa---CGUGa--CGGGgGGAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 132924 | 0.71 | 0.427441 |
Target: 5'- uCUGcGGGaGCUGCGCUGCCaggaCCCCgacacgUCCc -3' miRNA: 3'- uGAC-CCCaUGACGUGACGG----GGGG------AGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 16188 | 0.71 | 0.418857 |
Target: 5'- gACcGGGGggAC-GCACggGCCgCCCUCCg -3' miRNA: 3'- -UGaCCCCa-UGaCGUGa-CGGgGGGAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 148700 | 0.71 | 0.410379 |
Target: 5'- uGCUGcu---CUGCACgaucggGCCCCCCUCCc -3' miRNA: 3'- -UGACcccauGACGUGa-----CGGGGGGAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 52016 | 0.72 | 0.361822 |
Target: 5'- cGCUGGGGUcccuGCUGUACUGgCCCggggugcgcgCgCUCCu -3' miRNA: 3'- -UGACCCCA----UGACGUGACgGGG----------G-GAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 43332 | 0.73 | 0.296788 |
Target: 5'- uCUGGGGgGCgGCAgUGCCgCCCC-CCg -3' miRNA: 3'- uGACCCCaUGaCGUgACGG-GGGGaGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 50270 | 0.75 | 0.252756 |
Target: 5'- uGCUGGGGgAC-GUGgaGUCCCCCUCCc -3' miRNA: 3'- -UGACCCCaUGaCGUgaCGGGGGGAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 71408 | 0.77 | 0.176502 |
Target: 5'- gGCgGGGGUGCccGCGCggacGCCCCCCggCCa -3' miRNA: 3'- -UGaCCCCAUGa-CGUGa---CGGGGGGa-GG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 105430 | 0.77 | 0.176502 |
Target: 5'- cGCUGGGccUGCaGCACUGCCgCCCgCUCCg -3' miRNA: 3'- -UGACCCc-AUGaCGUGACGG-GGG-GAGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 8399 | 0.86 | 0.044073 |
Target: 5'- aACUGGGuUACUGCACuUGCCCCCCcCCg -3' miRNA: 3'- -UGACCCcAUGACGUG-ACGGGGGGaGG- -5' |
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5317 | 3' | -60.8 | NC_001798.1 | + | 8276 | 1.1 | 0.000823 |
Target: 5'- aACUGGGGUACUGCACUGCCCCCCUCCu -3' miRNA: 3'- -UGACCCCAUGACGUGACGGGGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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