miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5317 5' -51.1 NC_001798.1 + 6613 0.67 0.98578
Target:  5'- gGGGGaCGGGGGGaCGGgccgGGGggacggggCCCCg -3'
miRNA:   3'- -CCCC-GCUCUCCaGUUa---UCUaaa-----GGGG- -5'
5317 5' -51.1 NC_001798.1 + 29500 0.67 0.98578
Target:  5'- cGGGGCcgccccGAGAGGggg--GGAUUcccUCCCUc -3'
miRNA:   3'- -CCCCG------CUCUCCaguuaUCUAA---AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 137333 0.67 0.983978
Target:  5'- cGGGCGuGGGGUCGGcca---UCCCUg -3'
miRNA:   3'- cCCCGCuCUCCAGUUaucuaaAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 39856 0.67 0.983978
Target:  5'- cGGGCGAGGcGUCGAggcuucggGGGUgccggcgUCCUCg -3'
miRNA:   3'- cCCCGCUCUcCAGUUa-------UCUAa------AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 31058 0.67 0.983978
Target:  5'- cGGGCG-GGGGUCGGgcacuaaccgGGGgcUCCCg -3'
miRNA:   3'- cCCCGCuCUCCAGUUa---------UCUaaAGGGg -5'
5317 5' -51.1 NC_001798.1 + 15191 0.67 0.983978
Target:  5'- gGGGGUGGGGGGgcuggCGAgccggggGGAgcgUCCgCg -3'
miRNA:   3'- -CCCCGCUCUCCa----GUUa------UCUaa-AGGgG- -5'
5317 5' -51.1 NC_001798.1 + 57467 0.67 0.983978
Target:  5'- gGGGGCGGGGccGGUuuggCGGUGGAgg-CCUUa -3'
miRNA:   3'- -CCCCGCUCU--CCA----GUUAUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 47229 0.67 0.983978
Target:  5'- aGGGGUGGGcGuGUCGuUGGGcggCCCCc -3'
miRNA:   3'- -CCCCGCUCuC-CAGUuAUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 130117 0.68 0.981382
Target:  5'- cGGGCGuAGAgcucggccucguGGUCGggggccacuucgucGUAGAUcgggUCCCCg -3'
miRNA:   3'- cCCCGC-UCU------------CCAGU--------------UAUCUAa---AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 9174 0.68 0.97986
Target:  5'- gGGGGC-AG-GGUCucUGGcgggUCCCCg -3'
miRNA:   3'- -CCCCGcUCuCCAGuuAUCuaa-AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 75870 0.68 0.97986
Target:  5'- cGGGGCGaAGAgaugcgGGUCGAggcGGAgg-CCCg -3'
miRNA:   3'- -CCCCGC-UCU------CCAGUUa--UCUaaaGGGg -5'
5317 5' -51.1 NC_001798.1 + 80550 0.68 0.97986
Target:  5'- -cGGCGGGGGGgCGcgAGGcgUCCCUc -3'
miRNA:   3'- ccCCGCUCUCCaGUuaUCUaaAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 149753 0.68 0.97918
Target:  5'- gGGGGCcgaGGGAGGUUucucgucucUCCCCa -3'
miRNA:   3'- -CCCCG---CUCUCCAGuuaucuaa-AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 30023 0.68 0.977527
Target:  5'- gGGGGCGAGGGaGgCAGggaGGAg--CCCg -3'
miRNA:   3'- -CCCCGCUCUC-CaGUUa--UCUaaaGGGg -5'
5317 5' -51.1 NC_001798.1 + 74975 0.68 0.976289
Target:  5'- cGGGCGAGAGGcCcgcccccaaggCCCCg -3'
miRNA:   3'- cCCCGCUCUCCaGuuaucuaaa--GGGG- -5'
5317 5' -51.1 NC_001798.1 + 31262 0.68 0.975002
Target:  5'- gGGGGUGGGAucugGGUCug-GGGgcggCCCUg -3'
miRNA:   3'- -CCCCGCUCU----CCAGuuaUCUaaa-GGGG- -5'
5317 5' -51.1 NC_001798.1 + 2537 0.68 0.975002
Target:  5'- cGGGGCGGGGGG-CGcgGc----CCCCg -3'
miRNA:   3'- -CCCCGCUCUCCaGUuaUcuaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 146420 0.68 0.972276
Target:  5'- cGGGGCGAGccGGG-CAGagugcGGAgc-CCCCg -3'
miRNA:   3'- -CCCCGCUC--UCCaGUUa----UCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 15409 0.68 0.972276
Target:  5'- cGGGGUugcggguccggGAGGGGUUguuUGGGg--CCCCg -3'
miRNA:   3'- -CCCCG-----------CUCUCCAGuu-AUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 29445 0.69 0.969644
Target:  5'- gGGGGCGGcgcaugcuaauGGGGUUcuUGGAguacacccgguuggUCCCCg -3'
miRNA:   3'- -CCCCGCU-----------CUCCAGuuAUCUaa------------AGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.