miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5318 3' -51.6 NC_001798.1 + 79358 0.66 0.97989
Target:  5'- uAGCGCGUaCGCCAgg-GCcgGCGGCCagacggGCg -3'
miRNA:   3'- -UUGUGUA-GCGGUauaCG--UGCUGGa-----CG- -5'
5318 3' -51.6 NC_001798.1 + 1647 0.66 0.97989
Target:  5'- cGGCGCGUCGggguaCAggcgcgcGUGCGCGGCCUccacGCg -3'
miRNA:   3'- -UUGUGUAGCg----GUa------UACGUGCUGGA----CG- -5'
5318 3' -51.6 NC_001798.1 + 43995 0.67 0.977513
Target:  5'- -gUAgGUCGCgCAgAUGUcuuucACGGCCUGCa -3'
miRNA:   3'- uuGUgUAGCG-GUaUACG-----UGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 56946 0.67 0.97215
Target:  5'- uGCACGUCGCCuuaaacgGCugGcCCUccaGCa -3'
miRNA:   3'- uUGUGUAGCGGuaua---CGugCuGGA---CG- -5'
5318 3' -51.6 NC_001798.1 + 30542 0.67 0.970375
Target:  5'- gGGCgACGUgugUGCCGUGUGCACgGAcgagaucgccccgccCCUGCg -3'
miRNA:   3'- -UUG-UGUA---GCGGUAUACGUG-CU---------------GGACG- -5'
5318 3' -51.6 NC_001798.1 + 24810 0.67 0.969147
Target:  5'- uGCugAUgCGCC---UGCGCGgggACCUGCg -3'
miRNA:   3'- uUGugUA-GCGGuauACGUGC---UGGACG- -5'
5318 3' -51.6 NC_001798.1 + 93275 0.67 0.969147
Target:  5'- cGCGCcggCGCCGUcgGgGCGuACCUGg -3'
miRNA:   3'- uUGUGua-GCGGUAuaCgUGC-UGGACg -5'
5318 3' -51.6 NC_001798.1 + 24751 0.67 0.969147
Target:  5'- cGACGCGccccgccugcgCGCCuggcUGCGCGAgCUGCg -3'
miRNA:   3'- -UUGUGUa----------GCGGuau-ACGUGCUgGACG- -5'
5318 3' -51.6 NC_001798.1 + 74233 0.67 0.969147
Target:  5'- cGACACG--GCC-UAUcuguuugacccGCACGGCCUGCc -3'
miRNA:   3'- -UUGUGUagCGGuAUA-----------CGUGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 139325 0.67 0.966253
Target:  5'- -cCGCAUCGCCGgcgcccgcgcgcgcUGUGCGGCCaugGCg -3'
miRNA:   3'- uuGUGUAGCGGUau------------ACGUGCUGGa--CG- -5'
5318 3' -51.6 NC_001798.1 + 79003 0.67 0.965921
Target:  5'- ---uCcgCGCCAUGcacgagcagcUGCGCGcCCUGCa -3'
miRNA:   3'- uuguGuaGCGGUAU----------ACGUGCuGGACG- -5'
5318 3' -51.6 NC_001798.1 + 34781 0.67 0.965921
Target:  5'- gAACGCGgaaaCGCCGccgGCGCGGCCcgggGCc -3'
miRNA:   3'- -UUGUGUa---GCGGUauaCGUGCUGGa---CG- -5'
5318 3' -51.6 NC_001798.1 + 38234 0.67 0.965921
Target:  5'- aGGCACGcgggguccguuuUgGUCGUGUGCAgggcguuuuCGGCCUGCc -3'
miRNA:   3'- -UUGUGU------------AgCGGUAUACGU---------GCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 90707 0.67 0.965921
Target:  5'- aGGCGCucgcagagAUCGCgCGgg-GCACGGCaCUGCa -3'
miRNA:   3'- -UUGUG--------UAGCG-GUauaCGUGCUG-GACG- -5'
5318 3' -51.6 NC_001798.1 + 80612 0.68 0.962464
Target:  5'- cAGCACGUgGCCGUGcugGCcgccGCGACCcaccGCa -3'
miRNA:   3'- -UUGUGUAgCGGUAUa--CG----UGCUGGa---CG- -5'
5318 3' -51.6 NC_001798.1 + 14196 0.68 0.962464
Target:  5'- cAGCACcUCGCCAacu-CGCGACCcagGCg -3'
miRNA:   3'- -UUGUGuAGCGGUauacGUGCUGGa--CG- -5'
5318 3' -51.6 NC_001798.1 + 46334 0.68 0.95877
Target:  5'- cACGCAgUCGCCGUgcucgGUGguC-ACCUGCg -3'
miRNA:   3'- uUGUGU-AGCGGUA-----UACguGcUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 130998 0.68 0.95877
Target:  5'- uGugGCAUCGCCAUAcGgGCcGCCgccagGCg -3'
miRNA:   3'- -UugUGUAGCGGUAUaCgUGcUGGa----CG- -5'
5318 3' -51.6 NC_001798.1 + 49493 0.68 0.954834
Target:  5'- -cUACAcCGCCAggcacacAUGCggggccgcaaccGCGACCUGCg -3'
miRNA:   3'- uuGUGUaGCGGUa------UACG------------UGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 25960 0.68 0.954834
Target:  5'- uGCGC-UgGCCGgcgGCGCGggACCUGCg -3'
miRNA:   3'- uUGUGuAgCGGUauaCGUGC--UGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.