Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5318 | 5' | -55.5 | NC_001798.1 | + | 24185 | 0.7 | 0.756774 |
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Target: 5'- -gGCUGgggccUGGCGCACGUGgCGGCc- -3' miRNA: 3'- caCGACaa---ACCGCGUGCGCaGCUGca -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 43663 | 0.7 | 0.707481 |
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Target: 5'- cGUGCUGgccgcGGgGCugGgGUCGugGg -3' miRNA: 3'- -CACGACaaa--CCgCGugCgCAGCugCa -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 120497 | 0.71 | 0.697391 |
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Target: 5'- gGUGCcGga-GGCGCGCGUGUUGGcCGUg -3' miRNA: 3'- -CACGaCaaaCCGCGUGCGCAGCU-GCA- -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 100078 | 0.71 | 0.677056 |
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Target: 5'- aUGCUGg--GGCGCAuCGCcGUCG-CGUg -3' miRNA: 3'- cACGACaaaCCGCGU-GCG-CAGCuGCA- -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 135320 | 0.71 | 0.677056 |
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Target: 5'- cGUGCUGgagcgccUGGUGCcggACGCGUgCGACGc -3' miRNA: 3'- -CACGACaa-----ACCGCG---UGCGCA-GCUGCa -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 137828 | 0.71 | 0.666827 |
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Target: 5'- gGUGCUGgaaacugUUGGCcacGUACGUGUCGuCGUc -3' miRNA: 3'- -CACGACa------AACCG---CGUGCGCAGCuGCA- -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 80692 | 0.72 | 0.646294 |
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Target: 5'- gGUGCUccucGGCGCGCcCGUCGugGUg -3' miRNA: 3'- -CACGAcaaaCCGCGUGcGCAGCugCA- -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 96956 | 0.72 | 0.605157 |
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Target: 5'- uGUGCUGgaccaGGCGCugGCGcggaccgCGGCGg -3' miRNA: 3'- -CACGACaaa--CCGCGugCGCa------GCUGCa -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 117243 | 0.73 | 0.56434 |
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Target: 5'- cGUGCUGUUUuccgaGCGCGCGUCGgagGCGUa -3' miRNA: 3'- -CACGACAAAccg--CGUGCGCAGC---UGCA- -5' |
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| 5318 | 5' | -55.5 | NC_001798.1 | + | 7979 | 0.94 | 0.029333 |
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Target: 5'- gGUGCU-UUUGGCGCACGCGUCGACGUg -3' miRNA: 3'- -CACGAcAAACCGCGUGCGCAGCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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