miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 5' -53 NC_001798.1 + 27530 0.66 0.962268
Target:  5'- --gGGAAGGCAgCCCCG--CGGCGcGCGg -3'
miRNA:   3'- gaaUUUUCCGU-GGGGUagGCUGC-CGU- -5'
5319 5' -53 NC_001798.1 + 101843 0.67 0.958631
Target:  5'- --gGGGAGGCGugggUCCCGg-CGGCGGCGg -3'
miRNA:   3'- gaaUUUUCCGU----GGGGUagGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 24314 0.67 0.958631
Target:  5'- -cUGAccGGGGCgcgaACCCCcgaCGACGGCGg -3'
miRNA:   3'- gaAUU--UUCCG----UGGGGuagGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 21072 0.67 0.958631
Target:  5'- --gGAucGGgGCCCCGUCCcccCGGCc -3'
miRNA:   3'- gaaUUuuCCgUGGGGUAGGcu-GCCGu -5'
5319 5' -53 NC_001798.1 + 92082 0.67 0.958255
Target:  5'- ------cGGCauucgACCCCAUCggagagaCGACGGCGg -3'
miRNA:   3'- gaauuuuCCG-----UGGGGUAG-------GCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 150175 0.67 0.95476
Target:  5'- -----cGGGCcgccGCCCCcUCCG-CGGCGu -3'
miRNA:   3'- gaauuuUCCG----UGGGGuAGGCuGCCGU- -5'
5319 5' -53 NC_001798.1 + 2430 0.67 0.950652
Target:  5'- ------uGGCuggGCCCCGgcggCUGGCGGCGc -3'
miRNA:   3'- gaauuuuCCG---UGGGGUa---GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 38838 0.67 0.950652
Target:  5'- --aAGGAGGCAauaUCCUuaauGUCCGACaGGCGu -3'
miRNA:   3'- gaaUUUUCCGU---GGGG----UAGGCUG-CCGU- -5'
5319 5' -53 NC_001798.1 + 57999 0.67 0.950652
Target:  5'- uUUGAAAuGGCgaucACCCCGaCCGcCGGCu -3'
miRNA:   3'- gAAUUUU-CCG----UGGGGUaGGCuGCCGu -5'
5319 5' -53 NC_001798.1 + 59258 0.67 0.950652
Target:  5'- -------cGCACCCgGggcCCGACGGCGc -3'
miRNA:   3'- gaauuuucCGUGGGgUa--GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 145906 0.67 0.950652
Target:  5'- -------cGCGCCCCA-CCGGCGGgAu -3'
miRNA:   3'- gaauuuucCGUGGGGUaGGCUGCCgU- -5'
5319 5' -53 NC_001798.1 + 3834 0.67 0.946301
Target:  5'- -----cGGGCGCCCCccagaggCCGggGCGGCu -3'
miRNA:   3'- gaauuuUCCGUGGGGua-----GGC--UGCCGu -5'
5319 5' -53 NC_001798.1 + 98593 0.67 0.946301
Target:  5'- ------cGGCgGCCCCGgcggccCCGGCGGCc -3'
miRNA:   3'- gaauuuuCCG-UGGGGUa-----GGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 154116 0.67 0.945402
Target:  5'- -----cGGGgACCCCGgcggcggggaccCCGGCGGCGg -3'
miRNA:   3'- gaauuuUCCgUGGGGUa-----------GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 91962 0.67 0.941705
Target:  5'- -----cGGGCccCCCCGUCCGGC-GCGa -3'
miRNA:   3'- gaauuuUCCGu-GGGGUAGGCUGcCGU- -5'
5319 5' -53 NC_001798.1 + 5596 0.67 0.941705
Target:  5'- ----cGAGGuCGCCCCGuuggUCCGcggGCGGCu -3'
miRNA:   3'- gaauuUUCC-GUGGGGU----AGGC---UGCCGu -5'
5319 5' -53 NC_001798.1 + 3295 0.67 0.941705
Target:  5'- ------cGGCgacGCCgCcgCCGACGGCAa -3'
miRNA:   3'- gaauuuuCCG---UGGgGuaGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 129693 0.68 0.936862
Target:  5'- ------cGGgGCCCCAguaCCGGCGcGCAu -3'
miRNA:   3'- gaauuuuCCgUGGGGUa--GGCUGC-CGU- -5'
5319 5' -53 NC_001798.1 + 51140 0.68 0.931769
Target:  5'- --cGGGAGGCccgcggucACCCCGggucCCGACGcGCGu -3'
miRNA:   3'- gaaUUUUCCG--------UGGGGUa---GGCUGC-CGU- -5'
5319 5' -53 NC_001798.1 + 2615 0.68 0.931769
Target:  5'- ----cGGGGCGCCgC--CCGGCGGCGc -3'
miRNA:   3'- gaauuUUCCGUGGgGuaGGCUGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.