miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5321 3' -48.4 NC_001798.1 + 26263 0.66 0.999161
Target:  5'- aCGAGGCGcacUCGCACcgCG-CCUGc-- -3'
miRNA:   3'- -GCUUCGCa--AGCGUGaaGCaGGAUuau -5'
5321 3' -48.4 NC_001798.1 + 126354 0.66 0.99897
Target:  5'- gGGAGCGgcuUCGCGCgggacUGUCCcGAUGg -3'
miRNA:   3'- gCUUCGCa--AGCGUGaa---GCAGGaUUAU- -5'
5321 3' -48.4 NC_001798.1 + 23056 0.67 0.998474
Target:  5'- aCGAGGcCGUUCGCACgaucccgUCGcCCc---- -3'
miRNA:   3'- -GCUUC-GCAAGCGUGa------AGCaGGauuau -5'
5321 3' -48.4 NC_001798.1 + 12721 0.69 0.990842
Target:  5'- gGggGCGUggugCgGCGCgaCGUCCUGGa- -3'
miRNA:   3'- gCuuCGCAa---G-CGUGaaGCAGGAUUau -5'
5321 3' -48.4 NC_001798.1 + 21858 0.71 0.966504
Target:  5'- --cAGUGcUCGCACUUUGcCCUAAUAa -3'
miRNA:   3'- gcuUCGCaAGCGUGAAGCaGGAUUAU- -5'
5321 3' -48.4 NC_001798.1 + 21995 0.75 0.856681
Target:  5'- --cAGCGcUCGCACUUUGcCCUAAUAa -3'
miRNA:   3'- gcuUCGCaAGCGUGAAGCaGGAUUAU- -5'
5321 3' -48.4 NC_001798.1 + 91695 1.04 0.032098
Target:  5'- gCGAAGCGUUCGCACUUUGUCCUAAUAg -3'
miRNA:   3'- -GCUUCGCAAGCGUGAAGCAGGAUUAU- -5'
5321 3' -48.4 NC_001798.1 + 5808 1.08 0.017441
Target:  5'- gCGAAGCGUUCGCACUUCGUCCUAAUAg -3'
miRNA:   3'- -GCUUCGCAAGCGUGAAGCAGGAUUAU- -5'
5321 3' -48.4 NC_001798.1 + 5670 1.08 0.017441
Target:  5'- gCGAAGCGUUCGCACUUCGUCCUAAUAg -3'
miRNA:   3'- -GCUUCGCAAGCGUGAAGCAGGAUUAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.