miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 79440 0.69 0.377396
Target:  5'- --cUCGACGC--CCGCGCCCgGGcCUCu -3'
miRNA:   3'- gcuAGCUGCGgcGGCGCGGGgCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 134417 0.69 0.378166
Target:  5'- aGGUCGACGUCGacccgcuggcccuguCCGCGCgcgucgccgagcacCCCGGCg- -3'
miRNA:   3'- gCUAGCUGCGGC---------------GGCGCG--------------GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 4616 0.69 0.385146
Target:  5'- --cUUGcGCGCCGUCGCGCUCCGGg-- -3'
miRNA:   3'- gcuAGC-UGCGGCGGCGCGGGGCCgag -5'
5322 3' -64.5 NC_001798.1 + 29814 0.69 0.385146
Target:  5'- cCGAgCGGcCGCCGCgGCagacCCCCGGCa- -3'
miRNA:   3'- -GCUaGCU-GCGGCGgCGc---GGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 152492 0.69 0.385146
Target:  5'- aCGAUUcccccaauaGCCG-CGCGCCCCGGCg- -3'
miRNA:   3'- -GCUAGcug------CGGCgGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 81443 0.69 0.388276
Target:  5'- cCGA-CGACGCCgGCgGCcccacgcccaauccgGCCCCGGCc- -3'
miRNA:   3'- -GCUaGCUGCGG-CGgCG---------------CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 81859 0.69 0.392211
Target:  5'- ---cCGACcaGCCGCCcaccccggaguccGCGCCCCcGGCUUg -3'
miRNA:   3'- gcuaGCUG--CGGCGG-------------CGCGGGG-CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 52514 0.69 0.393001
Target:  5'- aCGAcgCGGCgGCCGCgCGCGCCgUgcuggcgacggGGCUCa -3'
miRNA:   3'- -GCUa-GCUG-CGGCG-GCGCGGgG-----------CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 55010 0.69 0.393001
Target:  5'- cCGG-CGGgGCCGCCcugccgggaGaCGCCCCGGaCUCc -3'
miRNA:   3'- -GCUaGCUgCGGCGG---------C-GCGGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 96155 0.69 0.393001
Target:  5'- cCGggUGACucgccaugGCgGCCGCGcCCCCGGC-Cg -3'
miRNA:   3'- -GCuaGCUG--------CGgCGGCGC-GGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 106031 0.69 0.393001
Target:  5'- cCGGaUGAC-CCGCCGUGCCuuCCGGgUCa -3'
miRNA:   3'- -GCUaGCUGcGGCGGCGCGG--GGCCgAG- -5'
5322 3' -64.5 NC_001798.1 + 17679 0.69 0.400159
Target:  5'- gGAUCGcggggugguucagGCGUCucagcaGCCGCGCCUCguGGCUCg -3'
miRNA:   3'- gCUAGC-------------UGCGG------CGGCGCGGGG--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 97441 0.69 0.40096
Target:  5'- aCGAggaGGCGCugCGCCGCGUgCUGGCg- -3'
miRNA:   3'- -GCUag-CUGCG--GCGGCGCGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 143877 0.69 0.40096
Target:  5'- gGAguggGACGCCGCC--GCCCCGcGCUUg -3'
miRNA:   3'- gCUag--CUGCGGCGGcgCGGGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 66635 0.69 0.40096
Target:  5'- gCGGUCGACGgCGucccccagaaaCCGCGCCaCCGcCUCc -3'
miRNA:   3'- -GCUAGCUGCgGC-----------GGCGCGG-GGCcGAG- -5'
5322 3' -64.5 NC_001798.1 + 25308 0.68 0.405784
Target:  5'- --cUCGGcCGCCGCCcuggaggccuacuGCGCCCCGcgggccguggccgaGCUCa -3'
miRNA:   3'- gcuAGCU-GCGGCGG-------------CGCGGGGC--------------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 98583 0.68 0.40902
Target:  5'- gCGGU-GGCGUCGgCG-GCCCCGGCg- -3'
miRNA:   3'- -GCUAgCUGCGGCgGCgCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 82091 0.68 0.40902
Target:  5'- ---cCGGCGCCuCaCGCGCCCCGcGgUCg -3'
miRNA:   3'- gcuaGCUGCGGcG-GCGCGGGGC-CgAG- -5'
5322 3' -64.5 NC_001798.1 + 29658 0.68 0.417181
Target:  5'- gCGAgCGACGgaGCgGCGgCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCggCGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 63343 0.68 0.417181
Target:  5'- --cUCGAUgGCCGCCaGgGcCCCCGGaCUCa -3'
miRNA:   3'- gcuAGCUG-CGGCGG-CgC-GGGGCC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.