miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 39830 0.67 0.494792
Target:  5'- gGAUCGuCGgcuccCCGCCGCGCugCCgGGCg- -3'
miRNA:   3'- gCUAGCuGC-----GGCGGCGCG--GGgCCGag -5'
5322 3' -64.5 NC_001798.1 + 42717 0.67 0.46814
Target:  5'- ---cCGuCGCCGUCGuCGCCaCCGGC-Cg -3'
miRNA:   3'- gcuaGCuGCGGCGGC-GCGG-GGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 42848 0.68 0.442246
Target:  5'- ---cUGAacCGCCGCCaGCGCCCCGcGCc- -3'
miRNA:   3'- gcuaGCU--GCGGCGG-CGCGGGGC-CGag -5'
5322 3' -64.5 NC_001798.1 + 43088 0.68 0.432956
Target:  5'- uCGggCGcCGCCGCCGCGUCCgcgaccaCGGUc- -3'
miRNA:   3'- -GCuaGCuGCGGCGGCGCGGG-------GCCGag -5'
5322 3' -64.5 NC_001798.1 + 43259 0.66 0.568842
Target:  5'- gCGAUCGcCGggggCGUCGUGCCCUGcuGCUCc -3'
miRNA:   3'- -GCUAGCuGCg---GCGGCGCGGGGC--CGAG- -5'
5322 3' -64.5 NC_001798.1 + 45076 0.7 0.347459
Target:  5'- aCGAcaccCGGCGCCucgugaagGCgCGCGCCCUGGCcCg -3'
miRNA:   3'- -GCUa---GCUGCGG--------CG-GCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 47653 0.67 0.50383
Target:  5'- cCGcgCGACGacuuCCGCCGCGgCgCUGGCcCg -3'
miRNA:   3'- -GCuaGCUGC----GGCGGCGCgG-GGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 47802 0.71 0.292812
Target:  5'- uCGuUCGGCGuCCGUCGCgggcucucacgGCCCCGGCc- -3'
miRNA:   3'- -GCuAGCUGC-GGCGGCG-----------CGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 47922 0.66 0.522113
Target:  5'- aCGcgCGggGCGCCuaaggccuCCGCGaCCCCGGCg- -3'
miRNA:   3'- -GCuaGC--UGCGGc-------GGCGC-GGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 47989 0.66 0.559398
Target:  5'- aGGcCGACuCCGCCGUgcuccuagacGCCCCcGCUCc -3'
miRNA:   3'- gCUaGCUGcGGCGGCG----------CGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 48159 0.67 0.50383
Target:  5'- gCGGUCgGGCGCCuggcgGCCaCGCacgCCCGGCUg -3'
miRNA:   3'- -GCUAG-CUGCGG-----CGGcGCG---GGGCCGAg -5'
5322 3' -64.5 NC_001798.1 + 48383 0.67 0.494792
Target:  5'- gGggCG-UGCCGCCGCGaccgcacgggcCCCCGcccGCUCg -3'
miRNA:   3'- gCuaGCuGCGGCGGCGC-----------GGGGC---CGAG- -5'
5322 3' -64.5 NC_001798.1 + 50226 0.71 0.312483
Target:  5'- gGAUaUGACGcCCGCCGaCGCCCUGGaCg- -3'
miRNA:   3'- gCUA-GCUGC-GGCGGC-GCGGGGCC-Gag -5'
5322 3' -64.5 NC_001798.1 + 51932 0.7 0.340245
Target:  5'- uGGggGcCGCCGCCGUGCCgCuGCUCa -3'
miRNA:   3'- gCUagCuGCGGCGGCGCGGgGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 52370 0.67 0.494792
Target:  5'- uGggCGACaCCGCggCGCGCCgCCuGCUCg -3'
miRNA:   3'- gCuaGCUGcGGCG--GCGCGG-GGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 52514 0.69 0.393001
Target:  5'- aCGAcgCGGCgGCCGCgCGCGCCgUgcuggcgacggGGCUCa -3'
miRNA:   3'- -GCUa-GCUG-CGGCG-GCGCGGgG-----------CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 53296 0.68 0.42544
Target:  5'- uGAcCGGCGCCGaUCGCaGCgUCCGGCUg -3'
miRNA:   3'- gCUaGCUGCGGC-GGCG-CG-GGGCCGAg -5'
5322 3' -64.5 NC_001798.1 + 54438 0.66 0.522113
Target:  5'- gGcgCGACaacgcacccCCGCCGCuCCCCcgGGCUCg -3'
miRNA:   3'- gCuaGCUGc--------GGCGGCGcGGGG--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 54661 0.73 0.22896
Target:  5'- gCGGcCGGCaGCCGCggCGCGCCCgcucgCGGCUCa -3'
miRNA:   3'- -GCUaGCUG-CGGCG--GCGCGGG-----GCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 54792 0.69 0.369751
Target:  5'- aCGAU-GACGCCGCCaUGCCCgCGGgCgUCg -3'
miRNA:   3'- -GCUAgCUGCGGCGGcGCGGG-GCC-G-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.