miRNA display CGI


Results 81 - 100 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 79973 0.66 0.531351
Target:  5'- gCGccgCGucCGCCGCCGgGCCCCcggGGgUCc -3'
miRNA:   3'- -GCua-GCu-GCGGCGGCgCGGGG---CCgAG- -5'
5322 3' -64.5 NC_001798.1 + 79483 0.73 0.208832
Target:  5'- aGGUCGACccgcaGCUGCUGCGCCgCCGGggCg -3'
miRNA:   3'- gCUAGCUG-----CGGCGGCGCGG-GGCCgaG- -5'
5322 3' -64.5 NC_001798.1 + 79440 0.69 0.377396
Target:  5'- --cUCGACGC--CCGCGCCCgGGcCUCu -3'
miRNA:   3'- gcuAGCUGCGgcGGCGCGGGgCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 79386 0.67 0.476944
Target:  5'- aCGGgcgCgGGCGCggaguccgCGcCCGCGCCCCuGCUCg -3'
miRNA:   3'- -GCUa--G-CUGCG--------GC-GGCGCGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 78032 0.72 0.256399
Target:  5'- gGGUCGACGCCGa-GC-CCCUGGCg- -3'
miRNA:   3'- gCUAGCUGCGGCggCGcGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 77778 0.66 0.578325
Target:  5'- uGGUCGagcuGCGCCGCCuGCagGCgCUGGCg- -3'
miRNA:   3'- gCUAGC----UGCGGCGG-CG--CGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 77646 0.67 0.494792
Target:  5'- aCGAacUUGAgGCCGCCGuCGCCgaccugaCGGCg- -3'
miRNA:   3'- -GCU--AGCUgCGGCGGC-GCGGg------GCCGag -5'
5322 3' -64.5 NC_001798.1 + 77402 0.68 0.462898
Target:  5'- gGGUCGGCgGCCGCCgaccugguaguccagGCGCgCCgGGCc- -3'
miRNA:   3'- gCUAGCUG-CGGCGG---------------CGCG-GGgCCGag -5'
5322 3' -64.5 NC_001798.1 + 77259 0.68 0.450788
Target:  5'- -uGUCGGCccugggcgcgGCCGcCCGCGaCCCGGcCUCg -3'
miRNA:   3'- gcUAGCUG----------CGGC-GGCGCgGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 77213 0.74 0.176862
Target:  5'- aCGGUgGACGCgGCCgugcgggcgcaugGCGCCCUGGCg- -3'
miRNA:   3'- -GCUAgCUGCGgCGG-------------CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 76553 0.7 0.354782
Target:  5'- gGAcagCGACGCgGCCuuCGUCCCGGCg- -3'
miRNA:   3'- gCUa--GCUGCGgCGGc-GCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 76389 0.67 0.46814
Target:  5'- uCGGUCcuGACcgaCGCCGCGaCCCaggGGCUCa -3'
miRNA:   3'- -GCUAG--CUGcg-GCGGCGC-GGGg--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 75257 0.72 0.245112
Target:  5'- ---aUGugGCCGCCacgGCGgUCCGGCUCg -3'
miRNA:   3'- gcuaGCugCGGCGG---CGCgGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 74788 0.66 0.531351
Target:  5'- gGGUCcaccgcACGCCGCCcCGCCCCcGCa- -3'
miRNA:   3'- gCUAGc-----UGCGGCGGcGCGGGGcCGag -5'
5322 3' -64.5 NC_001798.1 + 73332 0.68 0.417181
Target:  5'- ---cCGcGCGCCGUCGaCGCgCCCGGCg- -3'
miRNA:   3'- gcuaGC-UGCGGCGGC-GCG-GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 73196 0.67 0.494792
Target:  5'- aGGUcacCGACGgCGUguuuCGCGCCUCGGCg- -3'
miRNA:   3'- gCUA---GCUGCgGCG----GCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 69313 0.66 0.559398
Target:  5'- aCGGUCa--GCCcucCCGCGCgCCgGGCUCc -3'
miRNA:   3'- -GCUAGcugCGGc--GGCGCG-GGgCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 69199 0.72 0.254108
Target:  5'- aGGUCGGuggggUGCCGCagggccaaaaggaGCGCCCCGGC-Cg -3'
miRNA:   3'- gCUAGCU-----GCGGCGg------------CGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 68940 0.68 0.433796
Target:  5'- cCGGUCca----GCCGCGCCCCGGCcCg -3'
miRNA:   3'- -GCUAGcugcggCGGCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 67600 0.66 0.568842
Target:  5'- uCGuUCgGACGgaGaCCGCGCUCCGGCg- -3'
miRNA:   3'- -GCuAG-CUGCggC-GGCGCGGGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.