miRNA display CGI


Results 101 - 120 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 73332 0.68 0.417181
Target:  5'- ---cCGcGCGCCGUCGaCGCgCCCGGCg- -3'
miRNA:   3'- gcuaGC-UGCGGCGGC-GCG-GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 63343 0.68 0.417181
Target:  5'- --cUCGAUgGCCGCCaGgGcCCCCGGaCUCa -3'
miRNA:   3'- gcuAGCUG-CGGCGG-CgC-GGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 29658 0.68 0.417181
Target:  5'- gCGAgCGACGgaGCgGCGgCCCGGCg- -3'
miRNA:   3'- -GCUaGCUGCggCGgCGCgGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 85979 0.68 0.417181
Target:  5'- gGAguUCGAgGCCGCCGCcgggGCgCUGGCg- -3'
miRNA:   3'- gCU--AGCUgCGGCGGCG----CGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 25724 0.68 0.417181
Target:  5'- gGAcCGGCGCCcCCGaCGUCUCGGCg- -3'
miRNA:   3'- gCUaGCUGCGGcGGC-GCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 3294 0.68 0.417181
Target:  5'- cCGG-CGACGCCGCCGC-CgaCGGCa- -3'
miRNA:   3'- -GCUaGCUGCGGCGGCGcGggGCCGag -5'
5322 3' -64.5 NC_001798.1 + 147029 0.68 0.42544
Target:  5'- cCGGggcUUGGcCGCCGaggUGCGCCCCGGC-Cg -3'
miRNA:   3'- -GCU---AGCU-GCGGCg--GCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 53296 0.68 0.42544
Target:  5'- uGAcCGGCGCCGaUCGCaGCgUCCGGCUg -3'
miRNA:   3'- gCUaGCUGCGGC-GGCG-CG-GGGCCGAg -5'
5322 3' -64.5 NC_001798.1 + 31579 0.68 0.42544
Target:  5'- cCGcgCGcccccGCGCgGCCGuCGCCCCGcGCg- -3'
miRNA:   3'- -GCuaGC-----UGCGgCGGC-GCGGGGC-CGag -5'
5322 3' -64.5 NC_001798.1 + 23912 0.68 0.42544
Target:  5'- cCGGuUCGAgGCCucggGCGCCCCGGCg- -3'
miRNA:   3'- -GCU-AGCUgCGGcgg-CGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 20350 0.68 0.42544
Target:  5'- gCGGUUGGCGCUGCCGgGCg--GGUUCg -3'
miRNA:   3'- -GCUAGCUGCGGCGGCgCGgggCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 43088 0.68 0.432956
Target:  5'- uCGggCGcCGCCGCCGCGUCCgcgaccaCGGUc- -3'
miRNA:   3'- -GCuaGCuGCGGCGGCGCGGG-------GCCGag -5'
5322 3' -64.5 NC_001798.1 + 138402 0.68 0.433796
Target:  5'- cCGcgCGGCGCCaGCCa--CCCCGcGCUCg -3'
miRNA:   3'- -GCuaGCUGCGG-CGGcgcGGGGC-CGAG- -5'
5322 3' -64.5 NC_001798.1 + 108666 0.68 0.433796
Target:  5'- aCGGcCGACGCaacgCGCCGC-CCCCGGggCc -3'
miRNA:   3'- -GCUaGCUGCG----GCGGCGcGGGGCCgaG- -5'
5322 3' -64.5 NC_001798.1 + 68940 0.68 0.433796
Target:  5'- cCGGUCca----GCCGCGCCCCGGCcCg -3'
miRNA:   3'- -GCUAGcugcggCGGCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 1492 0.68 0.433796
Target:  5'- ---aUGGCGUCGcCCGCGCCCgaGGCg- -3'
miRNA:   3'- gcuaGCUGCGGC-GGCGCGGGg-CCGag -5'
5322 3' -64.5 NC_001798.1 + 26410 0.68 0.433796
Target:  5'- uCGAgccCGACGgCGaCGCGCCCCcGCUg -3'
miRNA:   3'- -GCUa--GCUGCgGCgGCGCGGGGcCGAg -5'
5322 3' -64.5 NC_001798.1 + 23734 0.68 0.433796
Target:  5'- uCGAgcUgGACGCCGaCGCgGCCuCCGGCg- -3'
miRNA:   3'- -GCU--AgCUGCGGCgGCG-CGG-GGCCGag -5'
5322 3' -64.5 NC_001798.1 + 23640 0.68 0.441397
Target:  5'- gCGAcCGcgggccgccuggaGCGCCGCCGgGCCCgcgCGGCg- -3'
miRNA:   3'- -GCUaGC-------------UGCGGCGGCgCGGG---GCCGag -5'
5322 3' -64.5 NC_001798.1 + 42848 0.68 0.442246
Target:  5'- ---cUGAacCGCCGCCaGCGCCCCGcGCc- -3'
miRNA:   3'- gcuaGCU--GCGGCGG-CGCGGGGC-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.