miRNA display CGI


Results 101 - 120 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5322 3' -64.5 NC_001798.1 + 55010 0.69 0.393001
Target:  5'- cCGG-CGGgGCCGCCcugccgggaGaCGCCCCGGaCUCc -3'
miRNA:   3'- -GCUaGCUgCGGCGG---------C-GCGGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 55198 0.7 0.319259
Target:  5'- aCGAaCGuCGCCGCCcucaGCGCCCUGuugacgaaGCUCa -3'
miRNA:   3'- -GCUaGCuGCGGCGG----CGCGGGGC--------CGAG- -5'
5322 3' -64.5 NC_001798.1 + 59833 0.7 0.326145
Target:  5'- ----gGGCGCCGCgGuCGCCcgcguCCGGCUCg -3'
miRNA:   3'- gcuagCUGCGGCGgC-GCGG-----GGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 61189 0.69 0.377396
Target:  5'- uGGUCGGCcugcaCCGgCGCGCgCCGGCg- -3'
miRNA:   3'- gCUAGCUGc----GGCgGCGCGgGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 62267 0.68 0.450788
Target:  5'- cCGAUCccaGGC-CCGCCGgGCggCCCGGCg- -3'
miRNA:   3'- -GCUAG---CUGcGGCGGCgCG--GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 63343 0.68 0.417181
Target:  5'- --cUCGAUgGCCGCCaGgGcCCCCGGaCUCa -3'
miRNA:   3'- gcuAGCUG-CGGCGG-CgC-GGGGCC-GAG- -5'
5322 3' -64.5 NC_001798.1 + 66027 0.67 0.46814
Target:  5'- gCGAUgUGGCGCaUGCCGCGggucgCCCGGCa- -3'
miRNA:   3'- -GCUA-GCUGCG-GCGGCGCg----GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 66147 0.67 0.485829
Target:  5'- --uUCaGCGCCGaCUGCaGCCCCcGCUCg -3'
miRNA:   3'- gcuAGcUGCGGC-GGCG-CGGGGcCGAG- -5'
5322 3' -64.5 NC_001798.1 + 66635 0.69 0.40096
Target:  5'- gCGGUCGACGgCGucccccagaaaCCGCGCCaCCGcCUCc -3'
miRNA:   3'- -GCUAGCUGCgGC-----------GGCGCGG-GGCcGAG- -5'
5322 3' -64.5 NC_001798.1 + 67600 0.66 0.568842
Target:  5'- uCGuUCgGACGgaGaCCGCGCUCCGGCg- -3'
miRNA:   3'- -GCuAG-CUGCggC-GGCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 68940 0.68 0.433796
Target:  5'- cCGGUCca----GCCGCGCCCCGGCcCg -3'
miRNA:   3'- -GCUAGcugcggCGGCGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 69199 0.72 0.254108
Target:  5'- aGGUCGGuggggUGCCGCagggccaaaaggaGCGCCCCGGC-Cg -3'
miRNA:   3'- gCUAGCU-----GCGGCGg------------CGCGGGGCCGaG- -5'
5322 3' -64.5 NC_001798.1 + 69313 0.66 0.559398
Target:  5'- aCGGUCa--GCCcucCCGCGCgCCgGGCUCc -3'
miRNA:   3'- -GCUAGcugCGGc--GGCGCG-GGgCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 73196 0.67 0.494792
Target:  5'- aGGUcacCGACGgCGUguuuCGCGCCUCGGCg- -3'
miRNA:   3'- gCUA---GCUGCgGCG----GCGCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 73332 0.68 0.417181
Target:  5'- ---cCGcGCGCCGUCGaCGCgCCCGGCg- -3'
miRNA:   3'- gcuaGC-UGCGGCGGC-GCG-GGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 74788 0.66 0.531351
Target:  5'- gGGUCcaccgcACGCCGCCcCGCCCCcGCa- -3'
miRNA:   3'- gCUAGc-----UGCGGCGGcGCGGGGcCGag -5'
5322 3' -64.5 NC_001798.1 + 75257 0.72 0.245112
Target:  5'- ---aUGugGCCGCCacgGCGgUCCGGCUCg -3'
miRNA:   3'- gcuaGCugCGGCGG---CGCgGGGCCGAG- -5'
5322 3' -64.5 NC_001798.1 + 76389 0.67 0.46814
Target:  5'- uCGGUCcuGACcgaCGCCGCGaCCCaggGGCUCa -3'
miRNA:   3'- -GCUAG--CUGcg-GCGGCGC-GGGg--CCGAG- -5'
5322 3' -64.5 NC_001798.1 + 76553 0.7 0.354782
Target:  5'- gGAcagCGACGCgGCCuuCGUCCCGGCg- -3'
miRNA:   3'- gCUa--GCUGCGgCGGc-GCGGGGCCGag -5'
5322 3' -64.5 NC_001798.1 + 77213 0.74 0.176862
Target:  5'- aCGGUgGACGCgGCCgugcgggcgcaugGCGCCCUGGCg- -3'
miRNA:   3'- -GCUAgCUGCGgCGG-------------CGCGGGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.