Results 1 - 20 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 127295 | 0.66 | 0.927581 |
Target: 5'- aCGCCCUgGGGcagacgcugcUGGAGCUGCugGUUAg- -3' miRNA: 3'- gGCGGGGgUCC----------ACCUUGGCG--UAAUac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 102429 | 0.66 | 0.927581 |
Target: 5'- -gGCCUCCAGGggacUGGGGcCCGCGa---- -3' miRNA: 3'- ggCGGGGGUCC----ACCUU-GGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 48373 | 0.66 | 0.927581 |
Target: 5'- gCCGCCCCgCGGGgcgUGccGCCGCGa---- -3' miRNA: 3'- -GGCGGGG-GUCC---ACcuUGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 9125 | 0.66 | 0.927581 |
Target: 5'- gCCGCCgCgAGGUGGucuGCgGCAc---- -3' miRNA: 3'- -GGCGGgGgUCCACCu--UGgCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 65681 | 0.66 | 0.927581 |
Target: 5'- aCGCCCC--GGUGGGGCgCGUgcucuguuuGUUGUGc -3' miRNA: 3'- gGCGGGGguCCACCUUG-GCG---------UAAUAC- -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 98620 | 0.66 | 0.927581 |
Target: 5'- cCCGCgCCUCGGGcGGcguGGCCGCGa---- -3' miRNA: 3'- -GGCG-GGGGUCCaCC---UUGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 102532 | 0.66 | 0.927581 |
Target: 5'- aCCGUCCCCGcGGccGGcaGGCCGCAc---- -3' miRNA: 3'- -GGCGGGGGU-CCa-CC--UUGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 137141 | 0.66 | 0.922192 |
Target: 5'- aCCGCCCCCuggGGGUGacgucAACgCGCAg---- -3' miRNA: 3'- -GGCGGGGG---UCCACc----UUG-GCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 85397 | 0.66 | 0.916567 |
Target: 5'- aCCGCCCCUGucUGGucuGCCGCAc---- -3' miRNA: 3'- -GGCGGGGGUccACCu--UGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 97927 | 0.66 | 0.916567 |
Target: 5'- gCGCCaCCAGGUGGAcCCGg------ -3' miRNA: 3'- gGCGGgGGUCCACCUuGGCguaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 70424 | 0.66 | 0.910706 |
Target: 5'- aCC-UCCCCGGGcugcUGGugcACCGCAUggcgGUGg -3' miRNA: 3'- -GGcGGGGGUCC----ACCu--UGGCGUAa---UAC- -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 123402 | 0.66 | 0.910706 |
Target: 5'- -gGCCCCCcg--GGAGCCGCGg---- -3' miRNA: 3'- ggCGGGGGuccaCCUUGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 150181 | 0.66 | 0.910706 |
Target: 5'- gCCGCCCCCuccgcggcguGG-GGGGCgGCAc---- -3' miRNA: 3'- -GGCGGGGGu---------CCaCCUUGgCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 51217 | 0.66 | 0.90461 |
Target: 5'- uCCGCgCCCCAGGUccguuacggccaGGAGCCa------- -3' miRNA: 3'- -GGCG-GGGGUCCA------------CCUUGGcguaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 91786 | 0.66 | 0.902735 |
Target: 5'- aCGCCCCCugccgaugacgcgcGGGgcgugGGGACCGUg----- -3' miRNA: 3'- gGCGGGGG--------------UCCa----CCUUGGCGuaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 11433 | 0.66 | 0.902106 |
Target: 5'- aCGCCCCCGGGguuguaaaucuGGCCGCGg---- -3' miRNA: 3'- gGCGGGGGUCCacc--------UUGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 96823 | 0.67 | 0.891723 |
Target: 5'- cCCGCCgCCuGGcGGA-CCGCAUcUGUa -3' miRNA: 3'- -GGCGGgGGuCCaCCUuGGCGUA-AUAc -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 138799 | 0.67 | 0.891723 |
Target: 5'- aCGCCCCCAGGc---GCUGCGUc--- -3' miRNA: 3'- gGCGGGGGUCCaccuUGGCGUAauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 2550 | 0.67 | 0.891723 |
Target: 5'- gCgGCCCCCGcGGgagGGGcgGCCGCGg---- -3' miRNA: 3'- -GgCGGGGGU-CCa--CCU--UGGCGUaauac -5' |
|||||||
5322 | 5' | -55.8 | NC_001798.1 | + | 103071 | 0.67 | 0.889711 |
Target: 5'- gUCGCCgggUCCAGGUGGcgaaacggagcgauGGCCGCGUc--- -3' miRNA: 3'- -GGCGG---GGGUCCACC--------------UUGGCGUAauac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home