Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 139554 | 0.68 | 0.907834 |
Target: 5'- gGGUGGGgggGCU-GGCGAGC-CGGGg -3' miRNA: 3'- -CCACUCaagCGAuCCGUUCGuGCCUg -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 3893 | 0.68 | 0.907834 |
Target: 5'- cGGUcGGG-UCGC--GGCGGGCugGGAg -3' miRNA: 3'- -CCA-CUCaAGCGauCCGUUCGugCCUg -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 74818 | 0.68 | 0.901476 |
Target: 5'- -uUGGGUgUCGCUGGGCccAGCugGG-Cu -3' miRNA: 3'- ccACUCA-AGCGAUCCGu-UCGugCCuG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 117740 | 0.68 | 0.901476 |
Target: 5'- --aGAGUgugGCcGGcGCGAGCGCGGGCc -3' miRNA: 3'- ccaCUCAag-CGaUC-CGUUCGUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 130866 | 0.69 | 0.894875 |
Target: 5'- --gGGGggCGCccgAGGCGgaggaGGCGCGGGCc -3' miRNA: 3'- ccaCUCaaGCGa--UCCGU-----UCGUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 4661 | 0.69 | 0.888036 |
Target: 5'- --gGGGggCGagGGGCGAGCGCGGGg -3' miRNA: 3'- ccaCUCaaGCgaUCCGUUCGUGCCUg -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 154694 | 0.69 | 0.887339 |
Target: 5'- uGGggGGGggCGCgaAGGCGGGCggcggcgGCGGGCg -3' miRNA: 3'- -CCa-CUCaaGCGa-UCCGUUCG-------UGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 356 | 0.69 | 0.887339 |
Target: 5'- uGGggGGGggCGCgaAGGCGGGCggcggcgGCGGGCg -3' miRNA: 3'- -CCa-CUCaaGCGa-UCCGUUCG-------UGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 123818 | 0.69 | 0.880962 |
Target: 5'- cGGUGAGggCgGCggGGGuCGGGCgggggGCGGGCg -3' miRNA: 3'- -CCACUCaaG-CGa-UCC-GUUCG-----UGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 120640 | 0.69 | 0.873658 |
Target: 5'- cGUGGGggCGgUGGGC--GUACGGGCc -3' miRNA: 3'- cCACUCaaGCgAUCCGuuCGUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 97215 | 0.69 | 0.873658 |
Target: 5'- gGGUGuGGUUCGggGGGCGGaugcguuccGCGgGGACg -3' miRNA: 3'- -CCAC-UCAAGCgaUCCGUU---------CGUgCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 75486 | 0.69 | 0.866129 |
Target: 5'- uGGcgGAGUUCGaCgcGGCGGcCGCGGACc -3' miRNA: 3'- -CCa-CUCAAGC-GauCCGUUcGUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 61209 | 0.7 | 0.858381 |
Target: 5'- --gGAGUUCGCc-GGCGAGCACcuGGCc -3' miRNA: 3'- ccaCUCAAGCGauCCGUUCGUGc-CUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 5500 | 0.7 | 0.833887 |
Target: 5'- cGG-GGGcgUCGCc-GGCcGGCGCGGGCg -3' miRNA: 3'- -CCaCUCa-AGCGauCCGuUCGUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 116567 | 0.7 | 0.816591 |
Target: 5'- uGGaUGGGgcCGCUGGucgaGCAggaGGCGCGGACu -3' miRNA: 3'- -CC-ACUCaaGCGAUC----CGU---UCGUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 10190 | 0.71 | 0.779979 |
Target: 5'- cGUGGGggggCGUUcgaaaGGGCGAGgACGGGCg -3' miRNA: 3'- cCACUCaa--GCGA-----UCCGUUCgUGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 6371 | 0.72 | 0.741164 |
Target: 5'- gGGUGAGgaggggcgggCGUggcGGGCAGGUguGCGGGCg -3' miRNA: 3'- -CCACUCaa--------GCGa--UCCGUUCG--UGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 25470 | 0.73 | 0.700764 |
Target: 5'- uGGUGAcGUUC-CUcGGCAGGCaccgcGCGGGCg -3' miRNA: 3'- -CCACU-CAAGcGAuCCGUUCG-----UGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 108222 | 0.73 | 0.669799 |
Target: 5'- cGGUGAGggUCGggGGGguGGCcCGGAUg -3' miRNA: 3'- -CCACUCa-AGCgaUCCguUCGuGCCUG- -5' |
|||||||
5323 | 3' | -53.4 | NC_001798.1 | + | 139498 | 0.75 | 0.596839 |
Target: 5'- -uUGGGUcCGUUGGGgGGGUACGGGCg -3' miRNA: 3'- ccACUCAaGCGAUCCgUUCGUGCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home