miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5323 5' -54.1 NC_001798.1 + 26079 0.7 0.810818
Target:  5'- aACGUGCAcGCGUGCgGGGUc--CUCa -3'
miRNA:   3'- -UGCACGUaCGCACGgCUCAcuuGAGa -5'
5323 5' -54.1 NC_001798.1 + 36769 0.67 0.91591
Target:  5'- gACGUGCAguuuaaGCGcccGCCGGGgugccgcGAGCUCg -3'
miRNA:   3'- -UGCACGUa-----CGCa--CGGCUCa------CUUGAGa -5'
5323 5' -54.1 NC_001798.1 + 57033 0.67 0.921686
Target:  5'- gGCGcUGCGUGCGcgagcaGCgCGGG-GAGCUCg -3'
miRNA:   3'- -UGC-ACGUACGCa-----CG-GCUCaCUUGAGa -5'
5323 5' -54.1 NC_001798.1 + 58404 0.66 0.954422
Target:  5'- cGCGUGC-UGCGgcggcaccugcgGCCGGGgcugGAgGCUCa -3'
miRNA:   3'- -UGCACGuACGCa-----------CGGCUCa---CU-UGAGa -5'
5323 5' -54.1 NC_001798.1 + 118437 0.66 0.942314
Target:  5'- gGCG-GCGggGCGcggGCCGGGgccgGGGCUCg -3'
miRNA:   3'- -UGCaCGUa-CGCa--CGGCUCa---CUUGAGa -5'
5323 5' -54.1 NC_001798.1 + 126916 1.07 0.005578
Target:  5'- cACGUGCAUGCGUGCCGAGUGAACUCUc -3'
miRNA:   3'- -UGCACGUACGCACGGCUCACUUGAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.