miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 3' -57 NC_001798.1 + 30243 0.67 0.835465
Target:  5'- uGGcGG---GGGGGGGGCUGcgggcgugucgucccACACUCGc -3'
miRNA:   3'- gCC-CCucaUCCCCCUCGAU---------------UGUGAGC- -5'
5324 3' -57 NC_001798.1 + 121257 0.67 0.840329
Target:  5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3'
miRNA:   3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5'
5324 3' -57 NC_001798.1 + 152482 0.67 0.856053
Target:  5'- cCGGGGGGcGGGGcGGcGC-AGCGCgCGg -3'
miRNA:   3'- -GCCCCUCaUCCC-CCuCGaUUGUGaGC- -5'
5324 3' -57 NC_001798.1 + 24881 0.67 0.856053
Target:  5'- gGGGGAGgAGGGGG-GUgGugGC-CGa -3'
miRNA:   3'- gCCCCUCaUCCCCCuCGaUugUGaGC- -5'
5324 3' -57 NC_001798.1 + 127193 0.67 0.851416
Target:  5'- gGGGGAGgggcggcgcccgcGGGGGAGC-GGCcgGCUCc -3'
miRNA:   3'- gCCCCUCau-----------CCCCCUCGaUUG--UGAGc -5'
5324 3' -57 NC_001798.1 + 124691 0.67 0.848286
Target:  5'- gGGGGAcagGGGGGGAGacgAGgGgUCGg -3'
miRNA:   3'- gCCCCUca-UCCCCCUCga-UUgUgAGC- -5'
5324 3' -57 NC_001798.1 + 144160 0.67 0.848286
Target:  5'- gCGGGGAac-GGGGGAcuguauGCUAugGCgagCGg -3'
miRNA:   3'- -GCCCCUcauCCCCCU------CGAUugUGa--GC- -5'
5324 3' -57 NC_001798.1 + 139251 0.67 0.847499
Target:  5'- gGGGGcugguguGGUGGGGGGcGUUuuCGCUgCGg -3'
miRNA:   3'- gCCCC-------UCAUCCCCCuCGAuuGUGA-GC- -5'
5324 3' -57 NC_001798.1 + 95209 0.67 0.840329
Target:  5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3'
miRNA:   3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5'
5324 3' -57 NC_001798.1 + 985 0.68 0.761314
Target:  5'- uGGGGcGGaAGGGGGcGCUGcggcccGCGCUCc -3'
miRNA:   3'- gCCCC-UCaUCCCCCuCGAU------UGUGAGc -5'
5324 3' -57 NC_001798.1 + 5902 0.68 0.779874
Target:  5'- uCGGGG-GUGGGGGcGGCUu---CUCGu -3'
miRNA:   3'- -GCCCCuCAUCCCCcUCGAuuguGAGC- -5'
5324 3' -57 NC_001798.1 + 143597 0.68 0.788965
Target:  5'- gGGGGGGgGGGGGGGGaaaUAACcACg-- -3'
miRNA:   3'- gCCCCUCaUCCCCCUCg--AUUG-UGagc -5'
5324 3' -57 NC_001798.1 + 139061 0.68 0.788965
Target:  5'- gGGGGAGUAGugguugcGGGGGCggucgguuccGCGCUUGg -3'
miRNA:   3'- gCCCCUCAUCc------CCCUCGau--------UGUGAGC- -5'
5324 3' -57 NC_001798.1 + 118944 0.68 0.788965
Target:  5'- uCGGGcGGcggGGGGGGGGCgucGGgACUCGc -3'
miRNA:   3'- -GCCCcUCa--UCCCCCUCGa--UUgUGAGC- -5'
5324 3' -57 NC_001798.1 + 118647 0.68 0.788965
Target:  5'- gCGGGuGGUGGGGGGgggcccGGCU-GCGuCUCGc -3'
miRNA:   3'- -GCCCcUCAUCCCCC------UCGAuUGU-GAGC- -5'
5324 3' -57 NC_001798.1 + 80230 0.68 0.788965
Target:  5'- gGGGcGAGaucGGGGGGCUcggGGCGCUCu -3'
miRNA:   3'- gCCC-CUCaucCCCCUCGA---UUGUGAGc -5'
5324 3' -57 NC_001798.1 + 46883 0.68 0.788965
Target:  5'- gCGcGGGGGUucGGGGccaGGGCUGGCAC-CGu -3'
miRNA:   3'- -GC-CCCUCAu-CCCC---CUCGAUUGUGaGC- -5'
5324 3' -57 NC_001798.1 + 95091 0.68 0.797918
Target:  5'- uCGcGGAG-AGGGGGGGCg---ACUCGg -3'
miRNA:   3'- -GCcCCUCaUCCCCCUCGauugUGAGC- -5'
5324 3' -57 NC_001798.1 + 93587 0.68 0.806725
Target:  5'- gGGGGAGggggAGGGGGGGaagagagaGAUGgUCGg -3'
miRNA:   3'- gCCCCUCa---UCCCCCUCga------UUGUgAGC- -5'
5324 3' -57 NC_001798.1 + 98561 0.68 0.761314
Target:  5'- gGGGGGGUGGGGuGGGGUgugGugGgUaCGg -3'
miRNA:   3'- gCCCCUCAUCCC-CCUCGa--UugUgA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.