Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5324 | 3' | -57 | NC_001798.1 | + | 68772 | 0.68 | 0.806725 |
Target: 5'- aCGGGGAGUucgAGGccgccgccGGGGcGCUGGCGCagGg -3' miRNA: 3'- -GCCCCUCA---UCC--------CCCU-CGAUUGUGagC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 127599 | 0.69 | 0.713113 |
Target: 5'- aCGGGGcgcGGgAGGGaGGGGCUGcuGCgaGCUCGg -3' miRNA: 3'- -GCCCC---UCaUCCC-CCUCGAU--UG--UGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 53966 | 0.69 | 0.713113 |
Target: 5'- -uGGGAGUAGuGGGGGGCgggugucGGCcguCUCGg -3' miRNA: 3'- gcCCCUCAUC-CCCCUCGa------UUGu--GAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 143039 | 0.69 | 0.742306 |
Target: 5'- uGGaGGGGUGGGucgggaggcuccGGGGGUguauACGCUCGa -3' miRNA: 3'- gCC-CCUCAUCC------------CCCUCGau--UGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121329 | 0.69 | 0.742306 |
Target: 5'- uCGGGGAGggaggagGGGGGGGGUcagccGCAC-Ca -3' miRNA: 3'- -GCCCCUCa------UCCCCCUCGau---UGUGaGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 145046 | 0.69 | 0.751862 |
Target: 5'- gCGGGcGGGUGGGcucgacGGGcucgGGCUGGCGCUgGg -3' miRNA: 3'- -GCCC-CUCAUCC------CCC----UCGAUUGUGAgC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 53407 | 0.69 | 0.751862 |
Target: 5'- uGGGGG--GGGGGGGGCgUGugACUa- -3' miRNA: 3'- gCCCCUcaUCCCCCUCG-AUugUGAgc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 133827 | 0.7 | 0.653142 |
Target: 5'- uGGGGAu--GGGGGAGC-AugAUUCGc -3' miRNA: 3'- gCCCCUcauCCCCCUCGaUugUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 143396 | 0.7 | 0.683313 |
Target: 5'- uCGGGGuuUGGGGGGGGUguuuggguggGAUcgcaGCUCGg -3' miRNA: 3'- -GCCCCucAUCCCCCUCGa---------UUG----UGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 128111 | 0.7 | 0.703235 |
Target: 5'- uGGGGAGUGacGGGGGGGgaAACuucCGg -3' miRNA: 3'- gCCCCUCAU--CCCCCUCgaUUGugaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 104976 | 0.71 | 0.632932 |
Target: 5'- gCGGGGAGUucccguggAGGcccggcgacugcGGGAGCUAaaccACAUUCGc -3' miRNA: 3'- -GCCCCUCA--------UCC------------CCCUCGAU----UGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121837 | 0.71 | 0.622822 |
Target: 5'- gGGGGAGgugGGGGGGGGgaAAgACg-- -3' miRNA: 3'- gCCCCUCa--UCCCCCUCgaUUgUGagc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 149667 | 0.71 | 0.61272 |
Target: 5'- aGGGGcggcAGUGGGGGGggguGGUUGGCAgUCu -3' miRNA: 3'- gCCCC----UCAUCCCCC----UCGAUUGUgAGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 66710 | 0.71 | 0.588544 |
Target: 5'- cCGGGGAGggcagggccgcuGGGGGGGCgg--GCUCGu -3' miRNA: 3'- -GCCCCUCau----------CCCCCUCGauugUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 154708 | 0.72 | 0.532976 |
Target: 5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3' miRNA: 3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 370 | 0.72 | 0.532976 |
Target: 5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3' miRNA: 3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 124829 | 0.72 | 0.562558 |
Target: 5'- gCGGGcGGUGGGcucGGGGGCggGACGCUUGa -3' miRNA: 3'- -GCCCcUCAUCC---CCCUCGa-UUGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 2573 | 0.72 | 0.562558 |
Target: 5'- cCGGGGAaaAGGGGGGGcCUGAgACcCGg -3' miRNA: 3'- -GCCCCUcaUCCCCCUC-GAUUgUGaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121575 | 0.73 | 0.513565 |
Target: 5'- aGGaGGAGgAGGGGGGGCgGGCACg-- -3' miRNA: 3'- gCC-CCUCaUCCCCCUCGaUUGUGagc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121792 | 0.73 | 0.485015 |
Target: 5'- gGuGGGAGUGGGGGGGGggGACGgaCa -3' miRNA: 3'- gC-CCCUCAUCCCCCUCgaUUGUgaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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