miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 3' -57 NC_001798.1 + 121924 1.1 0.002122
Target:  5'- aCGGGGAGUAGGGGGAGCUAACACUCGg -3'
miRNA:   3'- -GCCCCUCAUCCCCCUCGAUUGUGAGC- -5'
5324 3' -57 NC_001798.1 + 139559 0.82 0.162567
Target:  5'- uCGGGGGGUGGGGGG-GCUGGCGagcCGg -3'
miRNA:   3'- -GCCCCUCAUCCCCCuCGAUUGUga-GC- -5'
5324 3' -57 NC_001798.1 + 43102 0.77 0.325424
Target:  5'- uCGGGGGcgcucGgcGGGGGGGCggaagaGACGCUCGg -3'
miRNA:   3'- -GCCCCU-----CauCCCCCUCGa-----UUGUGAGC- -5'
5324 3' -57 NC_001798.1 + 68921 0.75 0.387668
Target:  5'- gGGGGGGgcGGGGGcgGGCgGGgGCUCGg -3'
miRNA:   3'- gCCCCUCauCCCCC--UCGaUUgUGAGC- -5'
5324 3' -57 NC_001798.1 + 7133 0.74 0.430349
Target:  5'- gCGGGGAG-AGGGGGGGggGGCGggCGg -3'
miRNA:   3'- -GCCCCUCaUCCCCCUCgaUUGUgaGC- -5'
5324 3' -57 NC_001798.1 + 121575 0.73 0.513565
Target:  5'- aGGaGGAGgAGGGGGGGCgGGCACg-- -3'
miRNA:   3'- gCC-CCUCaUCCCCCUCGaUUGUGagc -5'
5324 3' -57 NC_001798.1 + 144432 0.73 0.523236
Target:  5'- gGGGGGGUuggGGGGGGAacGCUGACcgGCgugCGu -3'
miRNA:   3'- gCCCCUCA---UCCCCCU--CGAUUG--UGa--GC- -5'
5324 3' -57 NC_001798.1 + 121792 0.73 0.485015
Target:  5'- gGuGGGAGUGGGGGGGGggGACGgaCa -3'
miRNA:   3'- gC-CCCUCAUCCCCCUCgaUUGUgaGc -5'
5324 3' -57 NC_001798.1 + 2573 0.72 0.562558
Target:  5'- cCGGGGAaaAGGGGGGGcCUGAgACcCGg -3'
miRNA:   3'- -GCCCCUcaUCCCCCUC-GAUUgUGaGC- -5'
5324 3' -57 NC_001798.1 + 124829 0.72 0.562558
Target:  5'- gCGGGcGGUGGGcucGGGGGCggGACGCUUGa -3'
miRNA:   3'- -GCCCcUCAUCC---CCCUCGa-UUGUGAGC- -5'
5324 3' -57 NC_001798.1 + 370 0.72 0.532976
Target:  5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3'
miRNA:   3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5'
5324 3' -57 NC_001798.1 + 154708 0.72 0.532976
Target:  5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3'
miRNA:   3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5'
5324 3' -57 NC_001798.1 + 149667 0.71 0.61272
Target:  5'- aGGGGcggcAGUGGGGGGggguGGUUGGCAgUCu -3'
miRNA:   3'- gCCCC----UCAUCCCCC----UCGAUUGUgAGc -5'
5324 3' -57 NC_001798.1 + 66710 0.71 0.588544
Target:  5'- cCGGGGAGggcagggccgcuGGGGGGGCgg--GCUCGu -3'
miRNA:   3'- -GCCCCUCau----------CCCCCUCGauugUGAGC- -5'
5324 3' -57 NC_001798.1 + 121837 0.71 0.622822
Target:  5'- gGGGGAGgugGGGGGGGGgaAAgACg-- -3'
miRNA:   3'- gCCCCUCa--UCCCCCUCgaUUgUGagc -5'
5324 3' -57 NC_001798.1 + 104976 0.71 0.632932
Target:  5'- gCGGGGAGUucccguggAGGcccggcgacugcGGGAGCUAaaccACAUUCGc -3'
miRNA:   3'- -GCCCCUCA--------UCC------------CCCUCGAU----UGUGAGC- -5'
5324 3' -57 NC_001798.1 + 133827 0.7 0.653142
Target:  5'- uGGGGAu--GGGGGAGC-AugAUUCGc -3'
miRNA:   3'- gCCCCUcauCCCCCUCGaUugUGAGC- -5'
5324 3' -57 NC_001798.1 + 143396 0.7 0.683313
Target:  5'- uCGGGGuuUGGGGGGGGUguuuggguggGAUcgcaGCUCGg -3'
miRNA:   3'- -GCCCCucAUCCCCCUCGa---------UUG----UGAGC- -5'
5324 3' -57 NC_001798.1 + 128111 0.7 0.703235
Target:  5'- uGGGGAGUGacGGGGGGGgaAACuucCGg -3'
miRNA:   3'- gCCCCUCAU--CCCCCUCgaUUGugaGC- -5'
5324 3' -57 NC_001798.1 + 53966 0.69 0.713113
Target:  5'- -uGGGAGUAGuGGGGGGCgggugucGGCcguCUCGg -3'
miRNA:   3'- gcCCCUCAUC-CCCCUCGa------UUGu--GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.