Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5324 | 3' | -57 | NC_001798.1 | + | 30243 | 0.67 | 0.835465 |
Target: 5'- uGGcGG---GGGGGGGGCUGcgggcgugucgucccACACUCGc -3' miRNA: 3'- gCC-CCucaUCCCCCUCGAU---------------UGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 40997 | 0.67 | 0.832187 |
Target: 5'- aCGGGGGuGUGGcGGGGGGgUAuuaaggcagggGCAgCUCGc -3' miRNA: 3'- -GCCCCU-CAUC-CCCCUCgAU-----------UGU-GAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 43402 | 0.67 | 0.832187 |
Target: 5'- gCGGGGA--AGGGGGAcauGCgc-CGCUCc -3' miRNA: 3'- -GCCCCUcaUCCCCCU---CGauuGUGAGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 4662 | 0.67 | 0.832187 |
Target: 5'- uGGGGGGcgAGGGGcGAGCgcggGGCGg-CGg -3' miRNA: 3'- gCCCCUCa-UCCCC-CUCGa---UUGUgaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 86159 | 0.67 | 0.823867 |
Target: 5'- uCGaGGGccgccuccAGUccgcgcGGGGGGAGCUGGCuCUUGa -3' miRNA: 3'- -GC-CCC--------UCA------UCCCCCUCGAUUGuGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 86584 | 0.67 | 0.823867 |
Target: 5'- gGGGGaAGUGGGaGGGGaagguCGCUCGg -3' miRNA: 3'- gCCCC-UCAUCCcCCUCgauu-GUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 53504 | 0.67 | 0.823867 |
Target: 5'- -aGGGAGgGGaGGGGAGCUGG-GCUUGu -3' miRNA: 3'- gcCCCUCaUC-CCCCUCGAUUgUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 98764 | 0.67 | 0.823867 |
Target: 5'- cCGGGGAGgccgcgGGGGcgaGGGGCUggUAggCGg -3' miRNA: 3'- -GCCCCUCa-----UCCC---CCUCGAuuGUgaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 52876 | 0.67 | 0.815377 |
Target: 5'- aGGGGGGUgggcgugugcGGGGGaGGGCUGAUGuagCGg -3' miRNA: 3'- gCCCCUCA----------UCCCC-CUCGAUUGUga-GC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 68772 | 0.68 | 0.806725 |
Target: 5'- aCGGGGAGUucgAGGccgccgccGGGGcGCUGGCGCagGg -3' miRNA: 3'- -GCCCCUCA---UCC--------CCCU-CGAUUGUGagC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 93587 | 0.68 | 0.806725 |
Target: 5'- gGGGGAGggggAGGGGGGGaagagagaGAUGgUCGg -3' miRNA: 3'- gCCCCUCa---UCCCCCUCga------UUGUgAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 95091 | 0.68 | 0.797918 |
Target: 5'- uCGcGGAG-AGGGGGGGCg---ACUCGg -3' miRNA: 3'- -GCcCCUCaUCCCCCUCGauugUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 46883 | 0.68 | 0.788965 |
Target: 5'- gCGcGGGGGUucGGGGccaGGGCUGGCAC-CGu -3' miRNA: 3'- -GC-CCCUCAu-CCCC---CUCGAUUGUGaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 80230 | 0.68 | 0.788965 |
Target: 5'- gGGGcGAGaucGGGGGGCUcggGGCGCUCu -3' miRNA: 3'- gCCC-CUCaucCCCCUCGA---UUGUGAGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 118647 | 0.68 | 0.788965 |
Target: 5'- gCGGGuGGUGGGGGGgggcccGGCU-GCGuCUCGc -3' miRNA: 3'- -GCCCcUCAUCCCCC------UCGAuUGU-GAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 118944 | 0.68 | 0.788965 |
Target: 5'- uCGGGcGGcggGGGGGGGGCgucGGgACUCGc -3' miRNA: 3'- -GCCCcUCa--UCCCCCUCGa--UUgUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 139061 | 0.68 | 0.788965 |
Target: 5'- gGGGGAGUAGugguugcGGGGGCggucgguuccGCGCUUGg -3' miRNA: 3'- gCCCCUCAUCc------CCCUCGau--------UGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 143597 | 0.68 | 0.788965 |
Target: 5'- gGGGGGGgGGGGGGGGaaaUAACcACg-- -3' miRNA: 3'- gCCCCUCaUCCCCCUCg--AUUG-UGagc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 5902 | 0.68 | 0.779874 |
Target: 5'- uCGGGG-GUGGGGGcGGCUu---CUCGu -3' miRNA: 3'- -GCCCCuCAUCCCCcUCGAuuguGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 98561 | 0.68 | 0.761314 |
Target: 5'- gGGGGGGUGGGGuGGGGUgugGugGgUaCGg -3' miRNA: 3'- gCCCCUCAUCCC-CCUCGa--UugUgA-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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