Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5324 | 3' | -57 | NC_001798.1 | + | 144160 | 0.67 | 0.848286 |
Target: 5'- gCGGGGAac-GGGGGAcuguauGCUAugGCgagCGg -3' miRNA: 3'- -GCCCCUcauCCCCCU------CGAUugUGa--GC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 144432 | 0.73 | 0.523236 |
Target: 5'- gGGGGGGUuggGGGGGGAacGCUGACcgGCgugCGu -3' miRNA: 3'- gCCCCUCA---UCCCCCU--CGAUUG--UGa--GC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 145046 | 0.69 | 0.751862 |
Target: 5'- gCGGGcGGGUGGGcucgacGGGcucgGGCUGGCGCUgGg -3' miRNA: 3'- -GCCC-CUCAUCC------CCC----UCGAUUGUGAgC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 149667 | 0.71 | 0.61272 |
Target: 5'- aGGGGcggcAGUGGGGGGggguGGUUGGCAgUCu -3' miRNA: 3'- gCCCC----UCAUCCCCC----UCGAUUGUgAGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 152482 | 0.67 | 0.856053 |
Target: 5'- cCGGGGGGcGGGGcGGcGC-AGCGCgCGg -3' miRNA: 3'- -GCCCCUCaUCCC-CCuCGaUUGUGaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 154708 | 0.72 | 0.532976 |
Target: 5'- gGGGGGGUguuuuuugGGGGGGGGCgcgAAgGCgggCGg -3' miRNA: 3'- gCCCCUCA--------UCCCCCUCGa--UUgUGa--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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