Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5324 | 3' | -57 | NC_001798.1 | + | 127193 | 0.67 | 0.851416 |
Target: 5'- gGGGGAGgggcggcgcccgcGGGGGAGC-GGCcgGCUCc -3' miRNA: 3'- gCCCCUCau-----------CCCCCUCGaUUG--UGAGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 124829 | 0.72 | 0.562558 |
Target: 5'- gCGGGcGGUGGGcucGGGGGCggGACGCUUGa -3' miRNA: 3'- -GCCCcUCAUCC---CCCUCGa-UUGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 124691 | 0.67 | 0.848286 |
Target: 5'- gGGGGAcagGGGGGGAGacgAGgGgUCGg -3' miRNA: 3'- gCCCCUca-UCCCCCUCga-UUgUgAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 123697 | 0.66 | 0.870986 |
Target: 5'- gCGGGGGucGGGcGGGGGUcgGGCACUa- -3' miRNA: 3'- -GCCCCUcaUCC-CCCUCGa-UUGUGAgc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121924 | 1.1 | 0.002122 |
Target: 5'- aCGGGGAGUAGGGGGAGCUAACACUCGg -3' miRNA: 3'- -GCCCCUCAUCCCCCUCGAUUGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121837 | 0.71 | 0.622822 |
Target: 5'- gGGGGAGgugGGGGGGGGgaAAgACg-- -3' miRNA: 3'- gCCCCUCa--UCCCCCUCgaUUgUGagc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121792 | 0.73 | 0.485015 |
Target: 5'- gGuGGGAGUGGGGGGGGggGACGgaCa -3' miRNA: 3'- gC-CCCUCAUCCCCCUCgaUUGUgaGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121575 | 0.73 | 0.513565 |
Target: 5'- aGGaGGAGgAGGGGGGGCgGGCACg-- -3' miRNA: 3'- gCC-CCUCaUCCCCCUCGaUUGUGagc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121329 | 0.69 | 0.742306 |
Target: 5'- uCGGGGAGggaggagGGGGGGGGUcagccGCAC-Ca -3' miRNA: 3'- -GCCCCUCa------UCCCCCUCGau---UGUGaGc -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 121257 | 0.67 | 0.840329 |
Target: 5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3' miRNA: 3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 118944 | 0.68 | 0.788965 |
Target: 5'- uCGGGcGGcggGGGGGGGGCgucGGgACUCGc -3' miRNA: 3'- -GCCCcUCa--UCCCCCUCGa--UUgUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 118647 | 0.68 | 0.788965 |
Target: 5'- gCGGGuGGUGGGGGGgggcccGGCU-GCGuCUCGc -3' miRNA: 3'- -GCCCcUCAUCCCCC------UCGAuUGU-GAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 113300 | 0.66 | 0.878142 |
Target: 5'- uGGGGGGUccaugccccgccGGGGGGGGCgguCGg-CGg -3' miRNA: 3'- gCCCCUCA------------UCCCCCUCGauuGUgaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 104976 | 0.71 | 0.632932 |
Target: 5'- gCGGGGAGUucccguggAGGcccggcgacugcGGGAGCUAaaccACAUUCGc -3' miRNA: 3'- -GCCCCUCA--------UCC------------CCCUCGAU----UGUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 98764 | 0.67 | 0.823867 |
Target: 5'- cCGGGGAGgccgcgGGGGcgaGGGGCUggUAggCGg -3' miRNA: 3'- -GCCCCUCa-----UCCC---CCUCGAuuGUgaGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 98561 | 0.68 | 0.761314 |
Target: 5'- gGGGGGGUGGGGuGGGGUgugGugGgUaCGg -3' miRNA: 3'- gCCCCUCAUCCC-CCUCGa--UugUgA-GC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 95209 | 0.67 | 0.840329 |
Target: 5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3' miRNA: 3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 95091 | 0.68 | 0.797918 |
Target: 5'- uCGcGGAG-AGGGGGGGCg---ACUCGg -3' miRNA: 3'- -GCcCCUCaUCCCCCUCGauugUGAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 93587 | 0.68 | 0.806725 |
Target: 5'- gGGGGAGggggAGGGGGGGaagagagaGAUGgUCGg -3' miRNA: 3'- gCCCCUCa---UCCCCCUCga------UUGUgAGC- -5' |
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5324 | 3' | -57 | NC_001798.1 | + | 87562 | 0.66 | 0.870986 |
Target: 5'- aGGGGGG-AGGaGGGGGCgggggGACAgcCUgGg -3' miRNA: 3'- gCCCCUCaUCC-CCCUCGa----UUGU--GAgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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