Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5324 | 3' | -57 | NC_001798.1 | + | 43402 | 0.67 | 0.832187 |
Target: 5'- gCGGGGA--AGGGGGAcauGCgc-CGCUCc -3' miRNA: 3'- -GCCCCUcaUCCCCCU---CGauuGUGAGc -5' |
|||||||
5324 | 3' | -57 | NC_001798.1 | + | 40997 | 0.67 | 0.832187 |
Target: 5'- aCGGGGGuGUGGcGGGGGGgUAuuaaggcagggGCAgCUCGc -3' miRNA: 3'- -GCCCCU-CAUC-CCCCUCgAU-----------UGU-GAGC- -5' |
|||||||
5324 | 3' | -57 | NC_001798.1 | + | 30243 | 0.67 | 0.835465 |
Target: 5'- uGGcGG---GGGGGGGGCUGcgggcgugucgucccACACUCGc -3' miRNA: 3'- gCC-CCucaUCCCCCUCGAU---------------UGUGAGC- -5' |
|||||||
5324 | 3' | -57 | NC_001798.1 | + | 121257 | 0.67 | 0.840329 |
Target: 5'- aGGGGGGaaagugGGGcGGGGGCgagGGCGgUUGa -3' miRNA: 3'- gCCCCUCa-----UCC-CCCUCGa--UUGUgAGC- -5' |
|||||||
5324 | 3' | -57 | NC_001798.1 | + | 95209 | 0.67 | 0.840329 |
Target: 5'- uGGGGAccccggaaGgcGGagaGGGGGCUGGgGCUCGc -3' miRNA: 3'- gCCCCU--------CauCC---CCCUCGAUUgUGAGC- -5' |
|||||||
5324 | 3' | -57 | NC_001798.1 | + | 127463 | 0.66 | 0.891807 |
Target: 5'- gCGGGGGGgAGGGGcuGCcgcgaGCUCGg -3' miRNA: 3'- -GCCCCUCaUCCCCcuCGauug-UGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home