Results 1 - 20 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5324 | 5' | -62.5 | NC_001798.1 | + | 85450 | 0.66 | 0.679729 |
Target: 5'- -gCGggGGgcGCCggggacggucaGCCCUCCcgcgcGCCGGGc -3' miRNA: 3'- ggGCuuCCuuCGG-----------CGGGGGG-----UGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 120618 | 0.66 | 0.679729 |
Target: 5'- gCCCGAcccgcGCCuGCCCCCC-CgGGAa -3' miRNA: 3'- -GGGCUuccuuCGG-CGGGGGGuGgCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 121315 | 0.66 | 0.679729 |
Target: 5'- --gGggGGggGUCaGCCgCaCCACCGGc -3' miRNA: 3'- gggCuuCCuuCGG-CGGgG-GGUGGCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 58303 | 0.66 | 0.679729 |
Target: 5'- gCgCGAgGGGGAGCgGCUCCugggCCACCuGGAa -3' miRNA: 3'- -GgGCU-UCCUUCGgCGGGG----GGUGG-CCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 139381 | 0.66 | 0.676848 |
Target: 5'- --gGggGGAaucGGCCGUgggcgcggcggaggCgCCCACCGGAc -3' miRNA: 3'- gggCuuCCU---UCGGCG--------------GgGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 126536 | 0.66 | 0.673964 |
Target: 5'- gCCGGAGGccccgcacgccgcGCCugccgccgccuGCCCCCCGCCGc- -3' miRNA: 3'- gGGCUUCCuu-----------CGG-----------CGGGGGGUGGCcu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 50162 | 0.66 | 0.670114 |
Target: 5'- uCUCG-GGGAAcGUCGCCCggggCCGCCGGu -3' miRNA: 3'- -GGGCuUCCUU-CGGCGGGg---GGUGGCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 147477 | 0.66 | 0.670114 |
Target: 5'- uCCCGAAGccaucuGAAGCCGUCCgaCCAUCa-- -3' miRNA: 3'- -GGGCUUC------CUUCGGCGGGg-GGUGGccu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 131778 | 0.66 | 0.670114 |
Target: 5'- cCCCGGcguccgGGGAGGCCGUCgacgagCCUGCCGcGGa -3' miRNA: 3'- -GGGCU------UCCUUCGGCGGg-----GGGUGGC-CU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 102112 | 0.66 | 0.670114 |
Target: 5'- cCCCGAGGuGGGCaCGuacaCCCCCCugCGc- -3' miRNA: 3'- -GGGCUUCcUUCG-GC----GGGGGGugGCcu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 3946 | 0.66 | 0.670114 |
Target: 5'- gCCCGcaacGGGgcGCCGCCgcugcugcugCUCCGCgGGGc -3' miRNA: 3'- -GGGCu---UCCuuCGGCGG----------GGGGUGgCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 90648 | 0.66 | 0.670114 |
Target: 5'- aCCGGAaucGggGCCGCCCCggCCcCCGa- -3' miRNA: 3'- gGGCUUc--CuuCGGCGGGG--GGuGGCcu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 58585 | 0.66 | 0.660472 |
Target: 5'- aCUCGccauGGcGGCCGCgCCCCCgGCCGcGGu -3' miRNA: 3'- -GGGCuu--CCuUCGGCG-GGGGG-UGGC-CU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 147268 | 0.66 | 0.660472 |
Target: 5'- aCCCGcGGGcuugccuAGCCcgguccccuacGCCCCCCucggcagcCCGGAc -3' miRNA: 3'- -GGGCuUCCu------UCGG-----------CGGGGGGu-------GGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 136487 | 0.66 | 0.660472 |
Target: 5'- gCCCGggGGccAGGUaCGCauCCUCCGCgGGGg -3' miRNA: 3'- -GGGCuuCC--UUCG-GCG--GGGGGUGgCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 133979 | 0.66 | 0.660472 |
Target: 5'- uCCCGcGGGGAGCgacggCGCCCgCCGCguaGGu -3' miRNA: 3'- -GGGCuUCCUUCG-----GCGGGgGGUGg--CCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 129668 | 0.66 | 0.660472 |
Target: 5'- cCCCGGccAGGgcGCCGCCgggcggcgCCCCGCg--- -3' miRNA: 3'- -GGGCU--UCCuuCGGCGG--------GGGGUGgccu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 116250 | 0.66 | 0.660472 |
Target: 5'- cCCCGGAGucu-CCGCCCcaCCCGCCGc- -3' miRNA: 3'- -GGGCUUCcuucGGCGGG--GGGUGGCcu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 76421 | 0.66 | 0.660472 |
Target: 5'- aCCCGGAGGccaccgcgGAGCUGgUCCggACCGGGg -3' miRNA: 3'- -GGGCUUCC--------UUCGGCgGGGggUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 73571 | 0.66 | 0.660472 |
Target: 5'- uCCUGAcgGGGGAGCUGUUCCCgGgacacCCGGu -3' miRNA: 3'- -GGGCU--UCCUUCGGCGGGGGgU-----GGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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