Results 1 - 20 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5324 | 5' | -62.5 | NC_001798.1 | + | 121890 | 1.09 | 0.000885 |
Target: 5'- gCCCGAAGGAAGCCGCCCCCCACCGGAc -3' miRNA: 3'- -GGGCUUCCUUCGGCGGGGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 83530 | 0.88 | 0.0281 |
Target: 5'- aCCGGccugcugcagcuaGGGGAGCCGCCCUCCGCCGGGg -3' miRNA: 3'- gGGCU-------------UCCUUCGGCGGGGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 152654 | 0.81 | 0.091452 |
Target: 5'- cUCCGggGGggGcCCGCCCCCgGCgCGGc -3' miRNA: 3'- -GGGCuuCCuuC-GGCGGGGGgUG-GCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 72434 | 0.79 | 0.119654 |
Target: 5'- gCCCGGAGGcccgguugcccGCCGCCCCCCACCc-- -3' miRNA: 3'- -GGGCUUCCuu---------CGGCGGGGGGUGGccu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 279 | 0.78 | 0.129458 |
Target: 5'- cCCCGGAGccGGCCGCuCCCCCGCgGGc -3' miRNA: 3'- -GGGCUUCcuUCGGCG-GGGGGUGgCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 154617 | 0.78 | 0.129458 |
Target: 5'- cCCCGGAGccGGCCGCuCCCCCGCgGGc -3' miRNA: 3'- -GGGCUUCcuUCGGCG-GGGGGUGgCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 8854 | 0.77 | 0.149863 |
Target: 5'- cCCCGAccGccGCCGCgCCCCACCGGc -3' miRNA: 3'- -GGGCUucCuuCGGCGgGGGGUGGCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 22600 | 0.77 | 0.169057 |
Target: 5'- gCCGggGGccggcgggcGGGgCGCCCCCC-CCGGAc -3' miRNA: 3'- gGGCuuCC---------UUCgGCGGGGGGuGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 31344 | 0.77 | 0.169057 |
Target: 5'- gCCCcccGGGAGCCGCggCCCCGCCGGGu -3' miRNA: 3'- -GGGcuuCCUUCGGCGg-GGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 25416 | 0.77 | 0.16505 |
Target: 5'- gCCUGGAGGAcGGCCGCggagCgCCCGCCGGGc -3' miRNA: 3'- -GGGCUUCCU-UCGGCG----GgGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 95831 | 0.77 | 0.153536 |
Target: 5'- cCCCGAggcuccacAGGGccacGGCCGCuCCCCCGCCGa- -3' miRNA: 3'- -GGGCU--------UCCU----UCGGCG-GGGGGUGGCcu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 145139 | 0.77 | 0.149863 |
Target: 5'- gCCCGAGGGcggccagcaacaGGGCCGCCCCCagCACCGc- -3' miRNA: 3'- -GGGCUUCC------------UUCGGCGGGGG--GUGGCcu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 103652 | 0.77 | 0.148416 |
Target: 5'- gCCgCGggGGAgauggcgagcgaagAGCCGCCCCCgcgccguCGCCGGGa -3' miRNA: 3'- -GG-GCuuCCU--------------UCGGCGGGGG-------GUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 46263 | 0.76 | 0.190423 |
Target: 5'- cCCCGAGGcGggGCCcacgucccGuCCCCCCGCCGaGGu -3' miRNA: 3'- -GGGCUUC-CuuCGG--------C-GGGGGGUGGC-CU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 103565 | 0.76 | 0.194971 |
Target: 5'- gCCCGGGcGGcGGCgC-CCCCCCGCCGGGc -3' miRNA: 3'- -GGGCUU-CCuUCG-GcGGGGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 63392 | 0.76 | 0.18465 |
Target: 5'- cCCCGggGGAagccgGGCCGCCCgCggcacaaaacaucgCCGCCGGu -3' miRNA: 3'- -GGGCuuCCU-----UCGGCGGG-G--------------GGUGGCCu -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 18980 | 0.76 | 0.199614 |
Target: 5'- cUCCGgcGGccGGCCGCCggCCCGCCGGAg -3' miRNA: 3'- -GGGCuuCCu-UCGGCGGg-GGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 20562 | 0.76 | 0.185968 |
Target: 5'- gCCgCGAcGGccccGGCCGCCuCCCCGCUGGAg -3' miRNA: 3'- -GG-GCUuCCu---UCGGCGG-GGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 57712 | 0.76 | 0.181605 |
Target: 5'- gUCCGcGAGGAGGCCGaCgCCCUGCUGGAg -3' miRNA: 3'- -GGGC-UUCCUUCGGC-GgGGGGUGGCCU- -5' |
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5324 | 5' | -62.5 | NC_001798.1 | + | 3867 | 0.75 | 0.231653 |
Target: 5'- uUCCGcGGGucgcccccgcaccGCCGCCCCCgCGCCGGGg -3' miRNA: 3'- -GGGCuUCCuu-----------CGGCGGGGG-GUGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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