miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 121890 1.09 0.000885
Target:  5'- gCCCGAAGGAAGCCGCCCCCCACCGGAc -3'
miRNA:   3'- -GGGCUUCCUUCGGCGGGGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 83530 0.88 0.0281
Target:  5'- aCCGGccugcugcagcuaGGGGAGCCGCCCUCCGCCGGGg -3'
miRNA:   3'- gGGCU-------------UCCUUCGGCGGGGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 152654 0.81 0.091452
Target:  5'- cUCCGggGGggGcCCGCCCCCgGCgCGGc -3'
miRNA:   3'- -GGGCuuCCuuC-GGCGGGGGgUG-GCCu -5'
5324 5' -62.5 NC_001798.1 + 72434 0.79 0.119654
Target:  5'- gCCCGGAGGcccgguugcccGCCGCCCCCCACCc-- -3'
miRNA:   3'- -GGGCUUCCuu---------CGGCGGGGGGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 154617 0.78 0.129458
Target:  5'- cCCCGGAGccGGCCGCuCCCCCGCgGGc -3'
miRNA:   3'- -GGGCUUCcuUCGGCG-GGGGGUGgCCu -5'
5324 5' -62.5 NC_001798.1 + 279 0.78 0.129458
Target:  5'- cCCCGGAGccGGCCGCuCCCCCGCgGGc -3'
miRNA:   3'- -GGGCUUCcuUCGGCG-GGGGGUGgCCu -5'
5324 5' -62.5 NC_001798.1 + 103652 0.77 0.148416
Target:  5'- gCCgCGggGGAgauggcgagcgaagAGCCGCCCCCgcgccguCGCCGGGa -3'
miRNA:   3'- -GG-GCuuCCU--------------UCGGCGGGGG-------GUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 145139 0.77 0.149863
Target:  5'- gCCCGAGGGcggccagcaacaGGGCCGCCCCCagCACCGc- -3'
miRNA:   3'- -GGGCUUCC------------UUCGGCGGGGG--GUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 8854 0.77 0.149863
Target:  5'- cCCCGAccGccGCCGCgCCCCACCGGc -3'
miRNA:   3'- -GGGCUucCuuCGGCGgGGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 95831 0.77 0.153536
Target:  5'- cCCCGAggcuccacAGGGccacGGCCGCuCCCCCGCCGa- -3'
miRNA:   3'- -GGGCU--------UCCU----UCGGCG-GGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 25416 0.77 0.16505
Target:  5'- gCCUGGAGGAcGGCCGCggagCgCCCGCCGGGc -3'
miRNA:   3'- -GGGCUUCCU-UCGGCG----GgGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 22600 0.77 0.169057
Target:  5'- gCCGggGGccggcgggcGGGgCGCCCCCC-CCGGAc -3'
miRNA:   3'- gGGCuuCC---------UUCgGCGGGGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 31344 0.77 0.169057
Target:  5'- gCCCcccGGGAGCCGCggCCCCGCCGGGu -3'
miRNA:   3'- -GGGcuuCCUUCGGCGg-GGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 57712 0.76 0.181605
Target:  5'- gUCCGcGAGGAGGCCGaCgCCCUGCUGGAg -3'
miRNA:   3'- -GGGC-UUCCUUCGGC-GgGGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 63392 0.76 0.18465
Target:  5'- cCCCGggGGAagccgGGCCGCCCgCggcacaaaacaucgCCGCCGGu -3'
miRNA:   3'- -GGGCuuCCU-----UCGGCGGG-G--------------GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 20562 0.76 0.185968
Target:  5'- gCCgCGAcGGccccGGCCGCCuCCCCGCUGGAg -3'
miRNA:   3'- -GG-GCUuCCu---UCGGCGG-GGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 46263 0.76 0.190423
Target:  5'- cCCCGAGGcGggGCCcacgucccGuCCCCCCGCCGaGGu -3'
miRNA:   3'- -GGGCUUC-CuuCGG--------C-GGGGGGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 103565 0.76 0.194971
Target:  5'- gCCCGGGcGGcGGCgC-CCCCCCGCCGGGc -3'
miRNA:   3'- -GGGCUU-CCuUCG-GcGGGGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 18980 0.76 0.199614
Target:  5'- cUCCGgcGGccGGCCGCCggCCCGCCGGAg -3'
miRNA:   3'- -GGGCuuCCu-UCGGCGGg-GGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 111416 0.75 0.204353
Target:  5'- gUCUGggGGGcggcaguGCCGCCCCCCGcgucguccCCGGGg -3'
miRNA:   3'- -GGGCuuCCUu------CGGCGGGGGGU--------GGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.